Evidence map›Paper›PMID 31703587›Full record

ArticleBMC medical genomics2019

A functional polymorphism in the promoter of miR-17-92 cluster is associated with decreased risk of ischemic stroke.

Huatuo Huang, Guijiang Wei, Chunfang Wang, Yulan Lu, Chunhong Liu, Rong Wang, Xiang Shi, Jun Yang, Yesheng Wei

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Huatuo HuangDepartment of Clinical Laboratory, The Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, China.
Guijiang WeiDepartment of Clinical Laboratory, The Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, China.
Chunfang WangDepartment of Clinical Laboratory, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, 533000, Guangxi, China.
Yulan LuDepartment of Clinical Laboratory, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, 533000, Guangxi, China.
Chunhong LiuDepartment of Clinical Laboratory, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, 533000, Guangxi, China.
Rong WangDepartment of Clinical Laboratory, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, 533000, Guangxi, China.
Xiang ShiDepartment of Clinical Laboratory, The Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, China.
Jun YangSouthern Medical University, Guangzhou, 510515, Guangdong, China. junyang1232@163.com.
Yesheng WeiDepartment of Clinical Laboratory, The Affiliated Hospital of Guilin Medical University, Guilin, 541001, Guangxi, China. yeshengwei22@163.com.
Affiliated Hospital of Youjiang Medical University for Nationalities · CNGuilin Medical University · CNSouthern Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe microRNA-17-92 (miR-17-92) cluster is one of the most extensively studied miRNA clusters. Abnormal expression of the cluster has been found to play important role in different kinds of human diseases, including ischemic stroke (IS). The aim of our study was to investigate the association between three polymorphisms (rs1491034, rs9301654 and rs982873) in the promoter of the miR-17-92 cluster and risk of IS.

methodsThree hundred and ninety-eight patients with IS and 397 control subjects were included. The genotypes of the three polymorphisms were determined by Snapshot SNP genotyping assay. Relative expression of the cluster in peripheral blood mononuclear cells (PBMCs) of cases and controls were examined by quantitative real-time PCR.

resultsSignificant association between rs9301654 polymorphism and risk of IS were observed basing on genotype, model and allele analyses (GA vs. AA: adjusted OR = 0.63, 95% CI: 0.41~0.97, P = 0.037; GG vs. AA: adjusted OR = 0.23, 95% CI: 0.07~0.78, P = 0.018; GA + GG vs. AA: adjusted OR = 0.57, 95% CI: 0.38~0.87, P = 0.009; GA + AA vs. GG: adjusted OR = 0.27, 95% CI: 0.08~0.89, P = 0.032; G vs. A: adjusted OR = 0.58, 95% CI: 0.40~0.83). Haplotype analysis showed that TGC and TGT haplotypes were associated with decreased risk of IS (OR = 0.59, 95% CI: 0.40~0.87, P = 0.007 for TGC haplotype; OR = 0.21, 95% CI: 0.06~0.75, P = 0.009 for TGT haplotype). Importantly, we found the expression of miR-17-5p was significant higher while miR-19a-3p was significant lower in patient with IS compared with the control group (P < 0.01), and patients with rs9301654GG or GA genotype displayed lower level of miR-19a-3p compared with the AA genotype (P < 0.01).

conclusionsOur findings indicated that rs9301654 polymorphism in the promoter of miR-17-92 cluster may be associated with susceptibility of IS in the Chinese population. However, we found that rs9301654 polymorphism and its respective gene expression did not demonstrate consistent association with IS in the Chinese population. Further studies such as gene-gene interaction are warranted to reveal the role of miR-19a and its regulatory genes in the etiology of IS.

Indexed as

Polymorphism, Single NucleotideAllelesCase-Control StudiesDNAFemaleGene FrequencyGenotypeHaplotypesHumansLeukocytes, MononuclearLinkage DisequilibriumLipidsMaleMicroRNAsMiddle AgedPromoter Regions, GeneticDNALipidsMicroRNAsMIR17HG, humanRNA, Long NoncodingGeneIschemic strokemiR-17-92 clusterPolymorphismPromoter

Identifiers

PMID31703587
PMCPMC6839137
OpenAlexW2984361166

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.