Evidence map›Paper›PMID 31703392›Full record

ArticleMetabolites2019

Metabolomics Test Materials for Quality Control: A Study of a Urine Materials Suite.

Daniel W Bearden, David A Sheen, Yamil Simón-Manso, Bruce A Benner, Werickson F C Rocha, Niksa Blonder, Katrice A Lippa, Richard D Beger, Laura K Schnackenberg, Jinchun Sun and 6 more

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Multiplatform untargeted metabolomics.Magnetic resonance in chemistry : MRC · 2023
    Review
  4. Yeast-based reference materials for quantitative metabolomics.Analytical and bioanalytical chemistry · 2022
    Article
  5. Review
  6. A Real-Life Reproducibility Assessment for NMR Metabolomics.Diagnostics (Basel, Switzerland) · 2022
    Article
  7. Review
  8. Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Daniel W BeardenChemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
David A SheenChemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.ORCID 0000-0003-1958-1848
Yamil Simón-MansoBiomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.ORCID 0000-0002-5462-1748
Bruce A BennerChemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
Werickson F C RochaChemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
Niksa BlonderChemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
Katrice A LippaChemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
Richard D BegerDivision of Systems Biology, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR 72079, USA.
Laura K SchnackenbergDivision of Systems Biology, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR 72079, USA.
Jinchun SunDivision of Systems Biology, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR 72079, USA.ORCID 0000-0003-1466-605X
Khyati Y MehtaDepartment of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, DC 20057, USA.ORCID 0000-0002-2613-1362
Amrita K CheemaDepartment of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, DC 20057, USA.
Haiwei GuCollege of Health Solutions, Arizona State University, Phoenix, AZ 85004, USA.
Ramesh MarupakaClinical Toxicology at CIAN Diagnostics, Frederick, MD 21703, USA.ORCID 0000-0002-7909-194X
G A Nagana GowdaDepartment of Anesthesiology and Pain Medicine, Mitochondria and Metabolism Center, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0002-0544-7464
Daniel RafteryDepartment of Anesthesiology and Pain Medicine, Mitochondria and Metabolism Center, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0003-2467-8118
National Institute of Standards and Technology · USNational Center for Toxicological Research · USGeorgetown University · USUniversity of Washington · USArizona State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is a lack of experimental reference materials and standards for metabolomics measurements, such as urine, plasma, and other human fluid samples. Reasons include difficulties with supply, distribution, and dissemination of information about the materials. Additionally, there is a long lead time because reference materials need their compositions to be fully characterized with uncertainty, a labor-intensive process for material containing thousands of relevant compounds. Furthermore, data analysis can be hampered by different methods using different software by different vendors. In this work, we propose an alternative implementation of reference materials. Instead of characterizing biological materials based on their composition, we propose using untargeted metabolomic data such as nuclear magnetic resonance (NMR) or gas and liquid chromatography-mass spectrometry (GC-MS and LC-MS) profiles. The profiles are then distributed with the material accompanying the certificate, so that researchers can compare their own metabolomic measurements with the reference profiles. To demonstrate this approach, we conducted an interlaboratory study (ILS) in which seven National Institute of Standards and Technology (NIST) urine Standard Reference Material

Indexed as

chromatographyinterlaboratory studynuclear magnetic resonanceprincipal components analysisreproducibility

Identifiers

PMID31703392
PMCPMC6918257
OpenAlexW2985564716

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.