Evidence map›Paper›PMID 31702902›Full record

ArticleJournal of the American Chemical Society2019

An in Vitro Selection Strategy Identifying Naked DNA That Localizes to Cell Nuclei.

John Smestad, Brandon Wilbanks, Louis J Maher

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

John SmestadMedical Scientist Training Program , Mayo Clinic College of Medicine and Science , Rochester , Minnesota 55905 , United States.
Brandon WilbanksDepartment of Biochemistry and Molecular Biology , Mayo Clinic College of Medicine and Science , Rochester , Minnesota 55905 , United States.
Louis J MaherDepartment of Biochemistry and Molecular Biology , Mayo Clinic College of Medicine and Science , Rochester , Minnesota 55905 , United States.ORCID 0000-0002-5043-6422
Mayo Clinic · US

Funding

Medical Scientist Traning Program at Mayo ClinicT32GM065841 · NIGMS · MAYO CLINIC ROCHESTER · PI KAUFMANN, SCOTT H, SCHIMMENTI, LISA A · 2003 to 2022
$5.8M
Cell-Penetrating Aptamers Targeting Sub-Cellular CompartmentsR01GM128579 · NIGMS · MAYO CLINIC ROCHESTER · PI MAHER, LOUIS JAMES · 2018 to 2021
$1.2M
Understanding succinate-induced global transcriptional and epigenetic reprogramming and identifying unique vulnerabilities intrinsic to SDH-deficient cellsF30CA220660 · NCI · MAYO CLINIC ROCHESTER · PI SMESTAD, JOHN ANDREW · 2017 to 2020
$187k
NCI NIH HHS F30 CA220660NIGMS NIH HHS R01 GM128579NIGMS NIH HHS T32 GM065841
6 · The paper itself

Abstract

Combinatorial chemistry drives the biological generation of protein structural diversity in antibodies and T-cell receptors. When applied to nucleic acids, vast engineered random libraries of DNA and RNA strands allow selection of affinity reagents ("aptamers") against molecular targets. Selection involves cycles rewarding target binding affinity with amplification. Despite the success of this approach, delivery of selected aptamers across cell membranes and to specific subcellular compartments is an unmet need in chemical biology. Here, we address this challenge, demonstrating in vitro selection of DNA aptamers capable of homing to nuclei of cultured cells without transfection agents or viral transduction. Selection of such folded karyophilic DNA aptamers (∼100 nucleotides) is achieved by a biosensor strategy that rewards exposure to nuclear DNA ligase. Identified DNA molecules are preferentially delivered to cell nuclei within minutes. Related strategies can be envisioned to select aptamers that home to other subcellular compartments.

Indexed as

Aptamers, NucleotideBase SequenceBiosensing TechniquesCell NucleusDNAGene LibraryHEK293 CellsHumansModels, MolecularNucleic Acid ConformationAptamers, NucleotideDNA

Identifiers

PMID31702902
PMCPMC7047663
OpenAlexW2987851861

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.