Evidence map›Paper›PMID 31702581›Full record

ArticleActa crystallographica. Section F, Structural biology communications2019

Inexpensive robotic system for standard and fluorescent imaging of protein crystals.

Dakota Handzlik, Eric T Larson, Erika Munschy, Galina Obmolova, Delphine Collin, Timothy K Craig

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dakota HandzlikHarkerBIO LLC, 700 Ellicott Street, Buffalo, NY 14203, USA.
Eric T LarsonHarkerBIO LLC, 700 Ellicott Street, Buffalo, NY 14203, USA.ORCID 0000-0002-2862-4291
Erika MunschyHarkerBIO LLC, 700 Ellicott Street, Buffalo, NY 14203, USA.
Galina ObmolovaHarkerBIO LLC, 700 Ellicott Street, Buffalo, NY 14203, USA.
Delphine CollinHarkerBIO LLC, 700 Ellicott Street, Buffalo, NY 14203, USA.
Timothy K CraigHarkerBIO LLC, 700 Ellicott Street, Buffalo, NY 14203, USA.ORCID 0000-0002-4625-444X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-crystallization imaging and classification is a labor-intensive process typically performed either by humans or by instruments that currently cost well over $100 000. This cost puts the use of crystallization-trial imaging outside the reach of most academic laboratories, and also start-up biotechnology firms, where resources are scarce. An imaging system has been designed and prototyped which automatically captures images from multi-well protein-crystallization experiments using both standard and fluorescent imaging techniques at a cost 28 times lower than current market rates. The machine uses a Panowin F1 3D printer as a base and controls it using G-code commands sent from a Python script running on a desktop computer. A graphical user interface (GUI) was developed to enable users to control the machine and facilitate image capture, classification and editing. A 488 nm laser diode and a 525 nm filter were incorporated to allow in situ fluorescent imaging of proteins trace-labeled with a fluorophore, Alexa Fluor 488. The instrument was primarily designed using a 3D printer and augmented using commercially available parts, and this publication aims to serve as a guide for comparable in-laboratory robotics projects.

Indexed as

Optical ImagingAnimalsChickensCosts and Cost AnalysisCrystallizationFluorescent DyesLasersMuramidasePrinting, Three-DimensionalProteinsRoboticsSoftwareFluorescent DyesMuramidaseProteinsautomated microscopefluorescent imagingimaging systemopen sourcerobotics

Identifiers

PMID31702581
PMCPMC6839817

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.