Evidence map›Paper›PMID 31702557›Full record

ArticleeLife2019

Non-enzymatic primer extension with strand displacement.

Lijun Zhou, Seohyun Chris Kim, Katherine H Ho, Derek K O'Flaherty, Constantin Giurgiu, Tom H Wright, Jack W Szostak

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  7. Simulations predict preferred MgBiophysical journal · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lijun ZhouDepartment of Molecular Biology, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, United States.ORCID 0000-0002-0393-4787
Seohyun Chris KimDepartment of Molecular Biology, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, United States.ORCID 0000-0002-2230-1774
Katherine H HoDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.
Derek K O'FlahertyDepartment of Molecular Biology, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, United States.ORCID 0000-0003-3693-6380
Constantin GiurgiuDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.ORCID 0000-0003-0145-0110
Tom H WrightDepartment of Molecular Biology, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, United States.ORCID 0000-0003-2231-8223
Jack W SzostakDepartment of Molecular Biology, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, United States.ORCID 0000-0003-4131-1203

Funding

CIHR Postdoctoral FellowshipFonds de Recherche du Québec - Nature et Technologies Postdoctoral Research Scholarship (B3)National Science Foundation CHE-1607034Simons Foundation 290363
6 · The paper itself

Abstract

Non-enzymatic RNA self-replication is integral to the emergence of the 'RNA World'. Despite considerable progress in non-enzymatic template copying, demonstrating a full replication cycle remains challenging due to the difficulty of separating the strands of the product duplex. Here, we report a prebiotically plausible approach to strand displacement synthesis in which short 'invader' oligonucleotides unwind an RNA duplex through a toehold/branch migration mechanism, allowing non-enzymatic primer extension on a template that was previously occupied by its complementary strand. Kinetic studies of single-step reactions suggest that following invader binding, branch migration results in a 2:3 partition of the template between open and closed states. Finally, we demonstrate continued primer extension with strand displacement by employing activated 3'-aminonucleotides, a more reactive proxy for ribonucleotides. Our study suggests that complete cycles of non-enzymatic replication of the primordial genetic material may have been facilitated by short RNA oligonucleotides.

Indexed as

Base SequenceFluorescenceMagnesiumRNATemplates, GeneticMagnesiumRNARNA primersbiochemistrychemical biologynonesynthesis 3'-NP-DNAsynthesis RNA

Identifiers

PMID31702557
PMCPMC6872209

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.