Evidence map›Paper›PMID 31701641›Full record

ArticleEnvironmental microbiology reports2020

Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes.

Marcus S Bray, Jieying Wu, Cory C Padilla, Frank J Stewart, David A Fowle, Cynthia Henny, Rachel L Simister, Katharine J Thompson, Sean A Crowe, Jennifer B Glass

Erratum issuedAbstract read
In one paragraph

Article in Environmental microbiology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Marcus S BraySchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Jieying WuSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Cory C PadillaSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Frank J StewartSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0002-8139-5176
David A FowleDepartment of Geology, University of Kansas, Lawrence, KS, USA.ORCID 0000-0001-7765-9047
Cynthia HennyResearch Center for Limnology, Indonesian Institute of Sciences, Cibinong, Indonesia.ORCID 0000-0003-1698-8909
Rachel L SimisterDepartment of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0002-9807-8652
Katharine J ThompsonDepartment of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0001-7997-9941
Sean A CroweSchool of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0001-8071-2144
Jennifer B GlassSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0003-0775-2486

Funding

Canada Research ChairsCanadian Foundation for Innovation 229652Canadian Foundation for Innovation 36071NASA NNA15BB03ANASA NNX14AJ87GNatural Sciences and Engineering Research Council of Canada 0487
6 · The paper itself

Abstract

Electroactive type IV pili, or e-pili, are used by some microbial species for extracellular electron transfer. Recent studies suggest that e-pili may be more phylogenetically and structurally diverse than previously assumed. Here, we used updated aromatic density thresholds (≥9.8% aromatic amino acids, ≤22-aa aromatic gaps and aromatic amino acids at residues 1, 24, 27, 50 and/or 51, and 32 and/or 57) to search for putative e-pilin genes in metagenomes from diverse ecosystems with active microbial metal cycling. Environmental putative e-pilins were diverse in length and phylogeny, and included truncated e-pilins in Geobacter spp., as well as longer putative e-pilins in Fe(II)-oxidizing Betaproteobacteria and Zetaproteobacteria.

Indexed as

MetagenomePhylogenyAmino Acids, AromaticBacteriaBacterial ProteinsEnvironmental MicrobiologyFimbriae, BacterialFimbriae ProteinsAmino Acids, AromaticBacterial ProteinsFimbriae Proteins

Identifiers

PMID31701641
PMCPMC7779115

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.