Evidence map›Paper›PMID 31699975›Full record

ArticleNature communications2019

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.

Feng Li, Narayana M Upadhyaya, Jana Sperschneider, Oadi Matny, Hoa Nguyen-Phuc, Rohit Mago, Castle Raley, Marisa E Miller, Kevin A T Silverstein, Eva Henningsen and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

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  17. Review
  18. Poplar: a phylogenomics pipeline.Bioinformatics advances · 2025
    Article
  19. Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Feng LiDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0001-8528-4249
Narayana M UpadhyayaCommonwealth Scientific and Industrial Research Organisation, Agriculture and Food, Canberra, ACT 2601, Australia.ORCID http://orcid.org/0000-0002-3052-0416
Jana SperschneiderBiological Data Science Institute, The Australian National University, Canberra, ACT 2601, Australia.
Oadi MatnyDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0002-8447-2886
Hoa Nguyen-PhucDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0001-9329-4287
Rohit MagoCommonwealth Scientific and Industrial Research Organisation, Agriculture and Food, Canberra, ACT 2601, Australia.
Castle RaleyLeidos Biomedical Research, Frederick, MD, 21702, USA.
Marisa E MillerDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.
Kevin A T SilversteinMinnesota Supercomputing Institute, Minneapolis, MN, 55455, USA.ORCID http://orcid.org/0000-0002-4955-3218
Eva HenningsenDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0001-9619-3705
Cory D HirschDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0002-3409-758X
Botma VisserUniversity of the Free State, Bloemfontein, 9301, Free State, South Africa.
Zacharias A PretoriusUniversity of the Free State, Bloemfontein, 9301, Free State, South Africa.
Brian J SteffensonDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA.ORCID http://orcid.org/0000-0001-7961-5363
Benjamin SchwessingerResearch School of Biology, The Australian National University, Canberra, ACT 2601, Australia.
Peter N DoddsCommonwealth Scientific and Industrial Research Organisation, Agriculture and Food, Canberra, ACT 2601, Australia. peter.dodds@csiro.au.ORCID http://orcid.org/0000-0003-0620-5923
Melania FigueroaCommonwealth Scientific and Industrial Research Organisation, Agriculture and Food, Canberra, ACT 2601, Australia. melania.figueroa@csiro.au.ORCID http://orcid.org/0000-0003-2636-661X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parasexuality contributes to diversity and adaptive evolution of haploid (monokaryotic) fungi. However, non-sexual genetic exchange mechanisms are not defined in dikaryotic fungi (containing two distinct haploid nuclei). Newly emerged strains of the wheat stem rust pathogen, Puccinia graminis f. sp. tritici (Pgt), such as Ug99, are a major threat to global food security. Here, we provide genomics-based evidence supporting that Ug99 arose by somatic hybridisation and nuclear exchange between dikaryons. Fully haplotype-resolved genome assembly and DNA proximity analysis reveal that Ug99 shares one haploid nucleus genotype with a much older African lineage of Pgt, with no recombination or chromosome reassortment. These findings indicate that nuclear exchange between dikaryotes can generate genetic diversity and facilitate the emergence of new lineages in asexual fungal populations.

Indexed as

BasidiomycotaEvolution, MolecularGenetic VariationGenome, FungalHaplotypesReproductionSequence Homology, Nucleic AcidTriticum

Identifiers

PMID31699975
PMCPMC6838127

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.