Evidence map›Paper›PMID 31699113›Full record

ArticleBMC medical genomics2019

Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis.

Haining Luo, Chao Chen, Yun Yang, Yinfeng Zhang, Yuan Yuan, Wanyang Wang, Renhua Wu, Zhiyu Peng, Ying Han, Lu Jiang and 10 more

Abstract readCase Reports
In one paragraph

Article in BMC medical genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Haining LuoCenter for Reproductive Medicine, Tianjin Central Hospital of Gynecology Obstetrics, Tianjin, China.
Chao ChenWuhan BGI Clinical Laboratory Co., Ltd, BGI-Wuhan, BGI-Shenzhen, Wuhan, 430074, China.
Yun YangWuhan BGI Clinical Laboratory Co., Ltd, BGI-Wuhan, BGI-Shenzhen, Wuhan, 430074, China.
Yinfeng ZhangCenter for Reproductive Medicine, Tianjin Central Hospital of Gynecology Obstetrics, Tianjin, China.
Yuan YuanTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin, 300308, China.
Wanyang WangTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin, 300308, China.
Renhua WuTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin, 300308, China.
Zhiyu PengBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Ying HanSchool of Medicine, Nankai University, Tianjin, 300070, China.
Lu JiangWuhan BGI Clinical Laboratory Co., Ltd, BGI-Wuhan, BGI-Shenzhen, Wuhan, 430074, China.
Ruqiang YaoCenter for Reproductive Medicine, Tianjin Central Hospital of Gynecology Obstetrics, Tianjin, China.
Xiaoying AnTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin, 300308, China.
Weiwei ZhangCenter for Reproductive Medicine, Tianjin Central Hospital of Gynecology Obstetrics, Tianjin, China.
Yanqun LeTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin, 300308, China.
Jiale XiangBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Na YiTianjin Medical Laboratory, BGI-Tianjin, BGI-Shenzhen, Tianjin, 300308, China.
Hui HuangBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Wei LiBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Yunshan ZhangCenter for Reproductive Medicine, Tianjin Central Hospital of Gynecology Obstetrics, Tianjin, China. tjzys@hotmail.com.
Jun SunWuhan BGI Clinical Laboratory Co., Ltd, BGI-Wuhan, BGI-Shenzhen, Wuhan, 430074, China. sunjun@genomics.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPreimplantation genetic testing for monogenic defects (PGT-M) has been available in clinical practice. This study aimed to validate the applicability of targeted capture sequencing in developing personalized PGT-M assay.

methodsOne couple at risk of transmitting Usher Syndrome to their offspring was recruited to this study. Customized capture probe targeted at USH2A gene and 350 kb flanking region were designed for PGT-M. Eleven blastocysts were biopsied and amplified by using multiple displacement amplification (MDA) and capture sequencing. A hidden Markov model (HMM) assisted haplotype analysis was performed to deduce embryo's genotype by using single nucleotide polymorphisms (SNPs) identified in each sample. The embryo without paternal rare variant was implanted and validated by conventional prenatal or postnatal diagnostic means.

resultsFour embryos were diagnosed as free of father's rare variant, two were transferred and one achieved a successful pregnancy. The fetal genotype was confirmed by Sanger sequencing of fetal genomic DNA obtained by amniocentesis. The PGT-M and prenatal diagnosis results were further confirmed by the molecular diagnosis of the baby's genomic DNA sample. The auditory test showed that the hearing was normal.

conclusionsTargeted capture sequencing is an effective and convenient strategy to develop customized PGT-M assay.

Indexed as

AdultAmniotic FluidChromosome AberrationsDNAEmbryo, MammalianExtracellular Matrix ProteinsFemaleFertilization in VitroFetal BloodGenotypeHaplotypesHeterozygoteHumansMarkov ChainsPedigreePolymorphism, Single NucleotideDNAExtracellular Matrix ProteinsUSH2A protein, humanPreimplantation genetic testingTargeted capture sequencingUsher syndrome

Identifiers

PMID31699113
PMCPMC6836415

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.