Evidence map›Paper›PMID 31697703›Full record

ArticlePloS one2019

Structural mechanism for regulation of DNA binding of BpsR, a Bordetella regulator of biofilm formation, by 6-hydroxynicotinic acid.

William T Booth, Ryan R Davis, Rajendar Deora, Thomas Hollis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

William T BoothDepartment of Biochemistry, Center for Structural Biology, Wake Forest School of Medicine, Winston-Salem, NC, United States of America.
Ryan R DavisDepartment of Biochemistry, Center for Structural Biology, Wake Forest School of Medicine, Winston-Salem, NC, United States of America.ORCID 0000-0002-9695-4356
Rajendar DeoraDepartment of Microbial Infection and Immunity, and Department of Microbiology, The Ohio State University, Columbus, Ohio, United States of America.
Thomas HollisDepartment of Biochemistry, Center for Structural Biology, Wake Forest School of Medicine, Winston-Salem, NC, United States of America.ORCID 0000-0002-4996-6346
Wake Forest University · USThe Ohio State University · US

Funding

Postdoctoral Research, Instruction, and Mentoring Experience (PRIME)K12GM102773 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOWLETT, ALLYN C · 2013 to 2018
$2.6M
Enhancing efficacy of pertussis vaccinesR01AI125560 · NIAID · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DEORA, RAJENDAR K, DUBEY, PURNIMA · 2016 to 2020
$1.9M
Structural and Computational Biophysics Training ProgramT32GM095440 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLLIS, THOMAS J, LYLES, DOUGLAS S. · 2011 to 2020
$1.7M
Bordetella Biofilms and PathogenesisR01AI075081 · NIAID · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DEORA, RAJENDAR K · 2008 to 2011
$1.5M
Regulation of biofilm formation and pathogenesis in Bordetella pertussisR21AI123805 · NIAID · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DEORA, RAJENDAR K · 2016 to 2017
$426k
NIAID NIH HHS R01 AI075081NIAID NIH HHS R01 AI125560NIAID NIH HHS R21 AI123805NIGMS NIH HHS K12 GM102773NIGMS NIH HHS T32 GM095440
6 · The paper itself

Abstract

Bordetella bacteria are respiratory pathogens of humans, birds, and livestock. Bordetella pertussis the causative agent of whopping cough remains a significant health issue. The transcriptional regulator, BpsR, represses a number of Bordetella genes relating to virulence, cell adhesion, cell motility, and nicotinic acid metabolism. DNA binding of BpsR is allosterically regulated by interaction with 6-hydroxynicotinic acid (6HNA), the first product in the nicotinic acid degradation pathway. To understand the mechanism of this regulation, we have determined the crystal structures of BpsR and BpsR in complex with 6HNA. The structures reveal that BpsR binding of 6HNA induces a conformational change in the protein to prevent DNA binding. We have also identified homologs of BpsR in other Gram negative bacteria in which the amino acids involved in recognition of 6HNA are conserved, suggesting a similar mechanism for regulating nicotinic acid degradation.

Indexed as

Amino AcidsBacterial ProteinsBiofilmsBordetella pertussisDNANiacinNicotinic AcidsTranscription FactorsVirulence6-hydroxynicotinic acidAmino AcidsBacterial ProteinsDNANiacinNicotinic AcidsTranscription Factors

Identifiers

PMID31697703
PMCPMC6837509
OpenAlexW2982857386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.