Evidence map›Paper›PMID 31697367›Full record

ArticleGenome biology and evolution2019

Ancient Introgression between Two Ape Malaria Parasite Species.

Lindsey J Plenderleith, Weimin Liu, Gerald H Learn, Dorothy E Loy, Sheri Speede, Crickette M Sanz, David B Morgan, Paco Bertolani, John A Hart, Terese B Hart and 2 more

Open access · goldAbstract readLetter
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Ape Origins of Human Malaria.Annual review of microbiology · 2020
    Review
  5. Review
  6. Host-Malaria Parasite Interactions and Impacts on Mutual Evolution.Frontiers in cellular and infection microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Lindsey J PlenderleithInstitute of Evolutionary Biology, and Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom.
Weimin LiuDepartment of Medicine, University of Pennsylvania.
Gerald H LearnDepartment of Medicine, University of Pennsylvania.
Dorothy E LoyDepartment of Medicine, University of Pennsylvania.
Sheri SpeedeSanaga-Yong Chimpanzee Rescue Center, International Development Association-Africa, Portland, Oregon.
Crickette M SanzDepartment of Anthropology, Washington University in St. Louis.
David B MorganWildlife Conservation Society, Congo Program, Brazzaville, Republic of the Congo.
Paco BertolaniLeverhulme Centre for Human Evolutionary Studies, University of Cambridge, Cambridge, United Kingdom.
John A HartLukuru Wildlife Research Foundation, Tshuapa-Lomami-Lualaba Project, Kinshasa, Democratic Republic of the Congo.
Terese B HartLukuru Wildlife Research Foundation, Tshuapa-Lomami-Lualaba Project, Kinshasa, Democratic Republic of the Congo.
Beatrice H HahnDepartment of Medicine, University of Pennsylvania.
Paul M SharpInstitute of Evolutionary Biology, and Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom.
University of Pennsylvania · USLukuru Foundation · CDCentre for Immunity, Infection and Evolution · GBLincoln Park Zoo · USUniversity of Cambridge · GBUniversity of Edinburgh · GBWildlife Conservation Society Congo · CG

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Great Ape Reservoirs of Human MalariaR01AI091595 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2011 to 2019
$5.3M
Studies of the precursor of the human AIDS virus in its natural chimpanzee hostR01AI120810 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2016 to 2020
$3.4M
NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI091595NIAID NIH HHS R01 AI120810
6 · The paper itself

Abstract

The Laverania clade comprises the human malaria parasite Plasmodium falciparum as well as at least seven additional parasite species that infect wild African apes. A recent analysis of Laverania genome sequences (Otto TD, et al. 2018. Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria. Nat Microbiol. 3: 687-697) reported three instances of interspecies gene transfer, one of which had previously been described. Generating gene sequences from additional ape parasites and re-examining sequencing reads generated in the Otto et al. study, we identified one of the newly described gene transfers as an assembly artifact of sequences derived from a sample coinfected by two parasite species. The second gene transfer between ancestors of two divergent chimpanzee parasite lineages was confirmed, but involved a much larger number of genes than originally described, many of which encode exported proteins that remodel, or bind to, erythrocytes. Because successful hybridization between Laverania species is very rare, it will be important to determine to what extent these gene transfers have shaped their host interactions.

Indexed as

Genetic IntrogressionAnimalsEvolution, MolecularHumansMalariaPan troglodytesPhylogenyPlasmodiumVirulencechimpanzeeexported proteinsLaveraniaPlasmodium

Identifiers

PMID31697367
PMCPMC7145702
OpenAlexW2986234377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.