Evidence map›Paper›PMID 31697236›Full record

ArticleeLife2019

Free circular introns with an unusual branchpoint in neuronal projections.

Harleen Saini, Alicia A Bicknell, Sean R Eddy, Melissa J Moore

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. The lncRNAGenes & development · 2024
    Article
  7. RNA in axons, dendrites, synapses and beyond.Frontiers in molecular neuroscience · 2024
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Subcellular Spatial Transcriptomes: Emerging Frontier for Understanding Gene Regulation.Cold Spring Harbor symposia on quantitative biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Harleen SainiRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0001-6954-4098
Alicia A BicknellRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, United States.
Sean R EddyDepartment of Molecular and Cellular Biology, Howard Hughes Medical Institute, Harvard University, Cambridge, United States.ORCID 0000-0001-6676-4706
Melissa J MooreRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, United States.
Howard Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

The second step of pre-mRNA splicingR01GM053007 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MOORE, MELISSA J. · 1995 to 2018
$5.6M
Howard Hughes Medical Institute International Student Research FellowshipNIGMS NIH HHS R01 GM053007NIGMS NIH HHS R01-GM53007
6 · The paper itself

Abstract

The polarized structure of axons and dendrites in neuronal cells depends in part on RNA localization. Previous studies have looked at which polyadenylated RNAs are enriched in neuronal projections or at synapses, but less is known about the distribution of non-adenylated RNAs. By physically dissecting projections from cell bodies of primary rat hippocampal neurons and sequencing total RNA, we found an unexpected set of free circular introns with a non-canonical branchpoint enriched in neuronal projections. These introns appear to be tailless lariats that escape debranching. They lack ribosome occupancy, sequence conservation, and known localization signals, and their function, if any, is not known. Nonetheless, their enrichment in projections has important implications for our understanding of the mechanisms by which RNAs reach distal compartments of asymmetric cells.

Indexed as

AnimalsAxonsCells, CulturedDendritesFemaleGene Expression ProfilingGene OntologyHigh-Throughput Nucleotide SequencingHippocampusIntronsNeuronsNucleic Acid ConformationRats, Sprague-DawleyRNA, CircularRNA, Circularcell biologyintronneuronsneuroscienceratRNARNA localization

Identifiers

PMID31697236
PMCPMC6879206
OpenAlexW2983449466

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.