Evidence map›Paper›PMID 31696996›Full record

ArticleHuman mutation2020

Truncating variants in UBAP1 associated with childhood-onset nonsyndromic hereditary spastic paraplegia.

Shen Gu, Chun-An Chen, Jill A Rosenfeld, Heidi Cope, Nathalie Launay, Kevin M Flanigan, Megan A Waldrop, Rachel Schrader, Jane Juusola, Ozlem Goker-Alpan and 7 more

Registry-linked trialOpen access · greenAbstract readCase Reports
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Cell biological insights into human STING variants.Cell structure and function · 2025
    Review
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  9. A novel mutation in theFrontiers in genetics · 2022
    Article
  10. Novel Frameshift Heterozygous Mutation inFrontiers in neurology · 2022
    Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 6 countries.

Shen GuDepartment of Molecular and Human Genetics, Faculty of Medicine, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-3107-1218
Chun-An ChenDepartment of Molecular and Human Genetics, Faculty of Medicine, Baylor College of Medicine, Houston, Texas.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Faculty of Medicine, Baylor College of Medicine, Houston, Texas.
Heidi CopeDepartment of Pediatrics, Division of Medical Genetics, Duke University School of Medicine, Durham, North Carolina.
Nathalie LaunayNeurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.
Kevin M FlaniganCenter for Gene Therapy, Nationwide Children's Hospital, Columbus, Ohio.
Megan A WaldropCenter for Gene Therapy, Nationwide Children's Hospital, Columbus, Ohio.ORCID 0000-0001-9621-8319
Rachel SchraderCenter for Gene Therapy, Nationwide Children's Hospital, Columbus, Ohio.
Jane JuusolaGeneDx, Inc., Gaithersburg, Maryland.
Ozlem Goker-AlpanNational Gaucher Foundation, Bethesda, Maryland.
Aubrey MilunskyCenter for Human Genetics and Department of Obstetrics & Gynecology, Tufts University School of Medicine, Boston, Massachusetts.
Agatha SchlüterNeurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.
Mónica TroncosoChild Neurology Service, Hospital San Borja Arriarán, Universidad de Chile, Santiago, Chile.
Aurora PujolNeurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.ORCID 0000-0002-9606-0600
Queenie K-G TanDepartment of Pediatrics, Division of Medical Genetics, Duke University School of Medicine, Durham, North Carolina.
Christian P SchaafInstitute of Human Genetics, Heidelberg University, Heidelberg, Germany.ORCID 0000-0002-2148-7490
Linyan MengDepartment of Molecular and Human Genetics, Faculty of Medicine, Baylor College of Medicine, Houston, Texas.ORCID 0000-0001-7474-9178
Baylor College of Medicine · USNationwide Children's Hospital · USDuke University · USInstituto de Salud Carlos III · ESChinese University of Hong Kong · HKHeidelberg University · DEHospital San Borja Arriarán · CLInstitució Catalana de Recerca i Estudis Avançats · ESTufts University · US

Funding

An integrated and diverse genomic medicine program for undiagnosed diseasesU01HG007672 · NHGRI · DUKE UNIVERSITY · PI SHASHI, VANDANA · 2014 to 2022
$13.4M
Clinical Sequencing Core Facility for the Undiagnosed Diseases Network (UDN)U01HG007942 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI ENG, CHRISTINE · 2014 to 2021
$10.2M
NHGRI NIH HHS U01 HG007672NHGRI NIH HHS U01 HG007942NIH Office of the Director U01HG007942
6 · The paper itself

Abstract

Hereditary spastic paraplegia (HSP) is a group of disorders with predominant symptoms of lower-extremity weakness and spasticity. Despite the delineation of numerous genetic causes of HSP, a significant portion of individuals with HSP remain molecularly undiagnosed. Through exome sequencing, we identified five unrelated families with childhood-onset nonsyndromic HSP, all presenting with progressive spastic gait, leg clonus, and toe walking starting from 7 to 8 years old. A recurrent two-base pair deletion (c.426_427delGA, p.K143Sfs*15) in the UBAP1 gene was found in four families, and a similar variant (c.475_476delTT, p.F159*) was detected in a fifth family. The variant was confirmed to be de novo in two families and inherited from an affected parent in two other families. RNA studies performed in lymphocytes from one patient with the de novo c.426_427delGA variant demonstrated escape of nonsense-mediated decay of the UBAP1 mutant transcript, suggesting the generation of a truncated protein. Both variants identified in this study are predicted to result in truncated proteins losing the capacity of binding to ubiquitinated proteins, hence appearing to exhibit a dominant-negative effect on the normal function of the endosome-specific endosomal sorting complexes required for the transport-I complex.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseMutationAge of OnsetCarrier ProteinsChildExome SequencingFemaleGenetic LociHumansLymphocytesMalePedigreePhenotypeSpastic Paraplegia, HereditaryCarrier ProteinsUBAP1 protein, humanautosomal dominantescape of nonsense-mediated decayhereditary spastic paraplegiaUBAP1

Identifiers

PMID31696996
PMCPMC8207780
OpenAlexW2989262187

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.