Evidence map›Paper›PMID 31696416›Full record

ArticleVirus genes2020

Molecular characterization and complete genome of alstroemeria mosaic virus (AlMV).

Francisco Mosquera-Yuqui, Patricia Garrido, Francisco J Flores

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Francisco Mosquera-YuquiDepartamento de Ciencias de La Vida y La Agricultura, Universidad de Las Fuerzas Armadas-ESPE, Sangolquí, Ecuador. bfmosquera1@espe.edu.ec.ORCID 0000-0001-8459-2653
Patricia GarridoCentro de Investigación de Alimentos, CIAL, Facultad de Ciencias de La Ingeniería e Industrias, Universidad Tecnológica Equinoccial, Quito, Ecuador.
Francisco J FloresDepartamento de Ciencias de La Vida y La Agricultura, Universidad de Las Fuerzas Armadas-ESPE, Sangolquí, Ecuador.
Universidad de las Fuerzas Armadas ESPE · ECUniversidad UTE · EC

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Even though alstroemeria mosaic virus (AlMV) is one of the most important viruses affecting alstroemeria plants, its genome is only partially available in public sequence databases. High throughput sequencing (HTS) of RNA from alstroemeria plants with symptoms of mosaic and streaking, collected in Lasso-Ecuador, indicated the presence of AlMV and lily symptomless virus. In this study, we aimed to assemble and characterize the complete genome sequence of AlMV. Reads from Illumina sequencing of ribosomal RNA-depleted total RNA were assembled into contigs that were mapped to the sunflower chlorotic mottle virus genome, revealing the 9774 [corrected] bp complete genome sequence of AlMV. Multiple sequence alignment of the AlMV polyprotein with close homologs allowed the identification of ten mature proteins P1, HC-Pro, P3, 6K1, CI, 6K2, NIa-VPg, NIa-Pro, NIb and CP. Furthermore, several potyvirus motifs were identified in the AlMV polyprotein including those related to potyvirus aphid transmission

Indexed as

Genome, ViralAlstroemeriaBase SequencePhylogenyPlant DiseasesPotyvirusViral ProteinsViral ProteinsAlMVAlstroemeriaGenomePolyproteinPotyvirus

Identifiers

PMID31696416
OpenAlexW2985008273

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.