Evidence map›Paper›PMID 31696317›Full record

ArticlePlanta2019

Evolutionary convergence or homology? Comparative cytogenomics of Caesalpinia group species (Leguminosae) reveals diversification in the pericentromeric heterochromatic composition.

Brena Van-Lume, Yennifer Mata-Sucre, Mariana Báez, Tiago Ribeiro, Bruno Huettel, Edeline Gagnon, Ilia J Leitch, Andrea Pedrosa-Harand, Gwilym P Lewis, Gustavo Souza

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Comparative analysis of repetitive DNA in dysploid and non-dysploid Phaseolus beans.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Article
  5. Article
  6. CMA/DAPI Banding of Plant Chromosomes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  7. Karyotype asymmetry in Cuscuta L. subgenus Pachystigma reflects its repeat DNA composition.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Article
  8. Article
  9. Article
  10. Comprehensive mapping of transposable elements reveals distinct patterns of element accumulation on chromosomes of wild beetles.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  11. Article
  12. Ribosomal DNA localization on Lathyrus species chromosomes by FISH.Journal, genetic engineering & biotechnology · 2020
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Brena Van-LumeLaboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil.
Yennifer Mata-SucreLaboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil.
Mariana BáezLaboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil.
Tiago RibeiroLaboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil.
Bruno HuettelMax Planck-Genome-center Cologne, Cologne, Germany.
Edeline GagnonRoyal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5NZ, UK.
Ilia J LeitchDepartment of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK.
Andrea Pedrosa-HarandLaboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil.
Gwilym P LewisDepartment of Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK.
Gustavo SouzaLaboratory of Plant Cytogenetics and Evolution, Department of Botany, Federal University of Pernambuco, Rua Nelson Chaves S/N, Cidade Universitária, Recife, PE, 50670-420, Brazil. luiz.rodriguessouza@ufpe.br.ORCID http://orcid.org/0000-0002-5700-6097

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico PQ - 310693/2018-7Conselho Nacional de Desenvolvimento Científico e Tecnológico PQ - 310804/2017-5Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Estágio Pós-Doutoral 88881.119479/2016-01Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco APQ- 0970-2.03/15
6 · The paper itself

Abstract

MAIN

conclusionWe demonstrated by cytogenomic analysis that the proximal heterochromatin of the Northeast Brazilian species of Caesalpinia group is enriched with phylogenetically conserved Ty3/Gypsy-Tekay RT, but diverge in the presence of Ty3/Gypsy-Athila RT and satDNA. The Caesalpinia Group includes 225 species and 27 monophyletic genera of which four occur in Northeastern Brazil: Erythrostemon (1 sp.), Cenostigma (7 spp.), Libidibia (1 sp.), and Paubrasilia (1 sp.). The last three genera are placed in different clades in the Caesalpinia Group phylogeny, and yet they are characterized by having a numerically stable karyotype 2n = 24 (16 M+8A) and GC-rich heterochromatic bands (chromomycin A

Indexed as

Biological EvolutionGenome, PlantSpecies SpecificityBrazilCaesalpiniaCentromereGenetic VariationHeterochromatinPhylogenyHeterochromatinChromosome evolutionCMA+ bandsGenome skimmingNext-generation sequencing (NGS)RepeatExplorerRepetitive DNASatDNATekay RT

Identifiers

PMID31696317

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.