Evidence map›Paper›PMID 31695904›Full record

ReviewEcology and evolution2019

Microbial functional diversity: From concepts to applications.

Arthur Escalas, Lauren Hale, James W Voordeckers, Yunfeng Yang, Mary K Firestone, Lisa Alvarez-Cohen, Jizhong Zhou

Abstract readReview
In one paragraph

Review in Ecology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  8. Review
  9. Gut Morphological Structure-Microbial Characteristics inAnimals : an open access journal from MDPI · 2025
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  11. Review
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24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Arthur EscalasMARBEC CNRS Ifremer IRD University of Montpellier Montpellier Cedex 5 France.ORCID https://orcid.org/0000-0002-6450-5716
Lauren HaleWater Management Research Unit SJVASC USDA-ARS Parlier CA USA.
James W VoordeckersWater Management Research Unit SJVASC USDA-ARS Parlier CA USA.
Yunfeng YangState Key Joint Laboratory of Environment Simulation and Pollution Control School of Environment Tsinghua University Beijing China.
Mary K FirestoneDepartment of Environmental Science, Policy, and Management University of California Berkeley CA USA.
Lisa Alvarez-CohenDepartment of Civil and Environmental Engineering University of California Berkeley CA USA.
Jizhong ZhouInstitute for Environmental Genomics and Department of Microbiology and Plant Biology University of Oklahoma Norman OK USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Functional diversity is increasingly recognized by microbial ecologists as the essential link between biodiversity patterns and ecosystem functioning, determining the trophic relationships and interactions between microorganisms, their participation in biogeochemical cycles, and their responses to environmental changes. Consequently, its definition and quantification have practical and theoretical implications. In this opinion paper, we present a synthesis on the concept of microbial functional diversity from its definition to its application. Initially, we revisit to the original definition of functional diversity, highlighting two fundamental aspects, the ecological unit under study and the functional traits used to characterize it. Then, we discuss how the particularities of the microbial world disallow the direct application of the concepts and tools developed for macroorganisms. Next, we provide a synthesis of the literature on the types of ecological units and functional traits available in microbial functional ecology. We also provide a list of more than 400 traits covering a wide array of environmentally relevant functions. Lastly, we provide examples of the use of functional diversity in microbial systems based on the different units and traits discussed herein. It is our hope that this paper will stimulate discussions and help the growing field of microbial functional ecology to realize a potential that thus far has only been attained in macrobial ecology.

Indexed as

functional diversityfunctional traitsmicrobial communitiestheoretical frameworks of diversitytrait‐based ecology

Identifiers

PMID31695904
PMCPMC6822047

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.