Evidence map›Paper›PMID 31695164›Full record

ArticleMolecular psychiatry2020

Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain.

Michael B Clark, Tomasz Wrzesinski, Aintzane B Garcia, Nicola A L Hall, Joel E Kleinman, Thomas Hyde, Daniel R Weinberger, Paul J Harrison, Wilfried Haerty, Elizabeth M Tunbridge

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 2 pooled it
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 2 syntheses or guidelines pooled it, 161 citations in OpenAlex.

  1. Pooled it
  2. Geno- and phenotypic characteristics and clinical outcomes ofFrontiers in cardiovascular medicine · 2022
    Pooled it
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  12. IsoProDB: an integrated map of human protein isoforms for accelerated research.Database : the journal of biological databases and curation · 2026
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Michael B Clark *Department of Psychiatry, University of Oxford, Oxford, UK.
Tomasz Wrzesinski *The Earlham Institute, Norwich, UK.
Aintzane B GarciaDepartment of Psychiatry, University of Oxford, Oxford, UK.
Nicola A L HallDepartment of Psychiatry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-3393-3494
Joel E KleinmanThe Lieber Institute for Brain Development, Baltimore, MD, USA.
Thomas HydeThe Lieber Institute for Brain Development, Baltimore, MD, USA.
Daniel R WeinbergerThe Lieber Institute for Brain Development, Baltimore, MD, USA.
Paul J HarrisonDepartment of Psychiatry, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-6719-1126
Wilfried Haerty *The Earlham Institute, Norwich, UK. Wilfried.Haerty@earlham.ac.uk.
Elizabeth M Tunbridge *Department of Psychiatry, University of Oxford, Oxford, UK. elizabeth.tunbridge@psych.ox.ac.uk.
Lieber Institute for Brain Development · USEarlham Institute · GBOxford Health NHS Foundation Trust · GBUniversity of Oxford · GBThe University of Melbourne · AU

Funding

Medical Research Council MR/P026028/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/J004669/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/P016774/1Wellcome Trust
6 · The paper itself

Abstract

RNA splicing is a key mechanism linking genetic variation with psychiatric disorders. Splicing profiles are particularly diverse in brain and difficult to accurately identify and quantify. We developed a new approach to address this challenge, combining long-range PCR and nanopore sequencing with a novel bioinformatics pipeline. We identify the full-length coding transcripts of CACNA1C in human brain. CACNA1C is a psychiatric risk gene that encodes the voltage-gated calcium channel Ca

Indexed as

Alternative SplicingBrainCalcium Channels, L-TypeExonsHumansProtein IsoformsRisk FactorsRNA, MessengerRNA SplicingSequence Analysis, DNACACNA1C protein, humanCalcium Channels, L-TypeProtein IsoformsRNA, Messenger

Identifiers

PMID31695164
PMCPMC6906184
OpenAlexW2977618246

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.