Evidence map›Paper›PMID 31694921›Full record

ArticleThe Journal of cell biology2019

TFEB controls retromer expression in response to nutrient availability.

Rachel Curnock, Alessia Calcagni, Andrea Ballabio, Peter J Cullen

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Endosome Traffic Modulates Pro-Inflammatory Signal Transduction in CD4International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Receptor Recycling by Retromer.Molecular and cellular biology · 2023
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Endosomal microdomains: Formation and function.Current opinion in cell biology · 2020
    Review
  20. Lysosomes as dynamic regulators of cell and organismal homeostasis.Nature reviews. Molecular cell biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Rachel CurnockSchool of Biochemistry, University of Bristol, Bristol, UK.
Alessia CalcagniTelethon Institute of Genetics and Medicine, Naples, Italy.
Andrea BallabioTelethon Institute of Genetics and Medicine, Naples, Italy.
Peter J CullenSchool of Biochemistry, University of Bristol, Bristol, UK pete.cullen@bristol.ac.uk.ORCID 0000-0002-9070-8349
University of Bristol · GBBaylor College of Medicine · USTelethon Institute Of Genetics And Medicine · IT

Funding

MODULATION OF CELLULAR CLEARANCE TO TREAT HUMAN DISEASER01NS078072 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BALLABIO, ANDREA · 2012 to 2020
$3.1M
European Research Council 694282Medical Research Council MR/L007363/1Medical Research Council MR/P018807/1NINDS NIH HHS R01 NS078072Wellcome TrustWellcome Trust 104568/Z/14/2
6 · The paper itself

Abstract

Endosomal recycling maintains the cell surface abundance of nutrient transporters for nutrient uptake, but how the cell integrates nutrient availability with recycling is less well understood. Here, in studying the recycling of human glutamine transporters ASCT2 (SLC1A5), LAT1 (SLC7A5), SNAT1 (SLC38A1), and SNAT2 (SLC38A2), we establish that following amino acid restriction, the adaptive delivery of SNAT2 to the cell surface relies on retromer, a master conductor of endosomal recycling. Upon complete amino acid starvation or selective glutamine depletion, we establish that retromer expression is upregulated by transcription factor EB (TFEB) and other members of the MiTF/TFE family of transcription factors through association with CLEAR elements in the promoters of the retromer genes

Indexed as

NutrientsAmino Acid Transport System AAmino Acid Transport System ASCAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell MembraneEndosomesGlutamineHEK293 CellsHeLa CellsHumansLarge Neutral Amino Acid-Transporter 1MaleMiceMice, Inbred C57BLMinor Histocompatibility AntigensAmino Acid Transport System AAmino Acid Transport System ASCBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsGlutamineLarge Neutral Amino Acid-Transporter 1Minor Histocompatibility AntigensNutrientsSLC1A5 protein, humanSlc1a5 protein, mouseSLC38A1 protein, humanSlc38a1 protein, mouseSLC38A2 protein, humanSlc38a2 protein, mouseSLC7A5 protein, humanSlc7a5 protein, mouseTcfe3 protein, mouseTFE3 protein, humanTFEB protein, humanVesicular Transport ProteinsVPS26A protein, humanVps26 protein, mouseVPS35 protein, humanVps35 protein, mouse

Identifiers

PMID31694921
PMCPMC6891082
OpenAlexW2986105336

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.