Evidence map›Paper›PMID 31694654›Full record

ArticleVirology journal2019

Important roles of C-terminal residues in degradation of capsid protein of classical swine fever virus.

Yuming Chen, Erpeng Zhu, Shuangqi Fan, Hongxing Ding, Shengming Ma, Mengjiao Zhu, Shaofeng Deng, Jinding Chen, Mingqiu Zhao

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yuming ChenCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Erpeng ZhuCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Shuangqi FanCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Hongxing DingCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Shengming MaCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Mengjiao ZhuCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Shaofeng DengCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China.
Jinding ChenCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China. jdchen@scau.edu.cn.
Mingqiu ZhaoCollege of Veterinary Medicine, South China Agricultural University, No. 483, Wushan Road; Tianhe District, Guangzhou, 510642, People's Republic of China. zmingqiu@scau.edu.cn.
South China Agricultural University · CNTianjin Medical University · CNTianjin Tianhe Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCapsid (C) protein plays an important role in the replication of classical swine fever virus (CSFV). The ubiquitin proteasome system (UPS) involves in replication of many viruses via modulation of viral proteins. The relationship of CSFV with UPS is poorly understood and the impact of 26S proteasome on C protein has never been reported before.

methodsIn this study, fused C protein with an EGFP tag is expressed in PK-15 and 3D4/2 cells. MG132 and 3-methyladenine (3-MA) are used to detect the roles of 26S proteasome and autophagolysosome in expression levels of C protein. Truncated and mutant C proteins are used to find the exact residues responsible for the degradation of C protein. Immunoprecipitaion is performed to find whether C protein is ubiquitinated or not.

resultsC-EGFP protein expresses in a cleaved form at a low level and is degraded by 26S proteasome which could be partly inhibited by MG132. C-terminal residues play more important roles in the degradation of C protein than N-terminal residues. Residues 260 to 267, especially M260 and L261, are crucial for the degradation. In addition, C-terminal residues 262 to 267 determine cleavage efficiency of C protein.

conclusionsCSFV C protein is degraded by 26S proteasome in a ubiquitin-independent manner. Last 8 residues at C-terminus of immature C protein play a major role in proteasomal degradation of CSFV C protein and determine the cleavage efficiency of C protein by signal peptide peptidase (SPP). Our findings provide valuable help for fully understanding degradation process of C protein and contribute to fully understanding the role of C protein in CSFV replication.

Indexed as

Amino AcidsAnimalsCapsid ProteinsCell LineClassical Swine FeverClassical Swine Fever VirusGene ExpressionGreen Fluorescent ProteinsMutationProteasome Endopeptidase ComplexRecombinant Fusion ProteinsSwineAmino AcidsATP dependent 26S proteaseCapsid Proteinsenhanced green fluorescent proteinGreen Fluorescent ProteinsProteasome Endopeptidase ComplexRecombinant Fusion Proteins26S proteasomeClassical swine fever virus (CSFV)CleavageC proteinDegradation

Identifiers

PMID31694654
PMCPMC6833258
OpenAlexW2988278346

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.