Evidence map›Paper›PMID 31694546›Full record

ArticleBMC plant biology2019

Elucidating the role of shikimate dehydrogenase in controlling the production of anthocyanins and hydrolysable tannins in the outer peels of pomegranate.

Rida Habashi, Yael Hacham, Rohit Dhakarey, Ifat Matityahu, Doron Holland, Li Tian, Rachel Amir

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  3. Article
  4. Article
  5. Plants (Basel, Switzerland) · 2023
    Article
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  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Rida HabashiMIGAL - Galilee Technology Center, 12100, Kiryat Shmona, Israel.
Yael HachamMIGAL - Galilee Technology Center, 12100, Kiryat Shmona, Israel.
Rohit DhakareyMIGAL - Galilee Technology Center, 12100, Kiryat Shmona, Israel.
Ifat MatityahuMIGAL - Galilee Technology Center, 12100, Kiryat Shmona, Israel.
Doron HollandNewe Ya'ar Research Center, Agricultural Research Organization, 30095, Ramat Yishay, Israel.
Li TianDepartment of Plant Sciences, University of California Davis, Davis, California, USA.
Rachel AmirMIGAL - Galilee Technology Center, 12100, Kiryat Shmona, Israel. rachel@migal.org.il.
Migal - Galilee Technology Center · ILTel Hai Academic College · ILAgricultural Research Organization · ILUniversity of California, Davis · US

Funding

BARD IS-4822-15 R
6 · The paper itself

Abstract

backgroundThe outer peels of pomegranate (Punica granatum L.) possess two groups of polyphenols that have health beneficial properties: anthocyanins (ATs, which also affect peel color); and hydrolysable tannins (HTs). Their biosynthesis intersects at 3-dehydroshikimate (3-DHS) in the shikimate pathway by the activity of shikimate dehydrogenase (SDH), which converts 3-DHS to shikimate (providing the precursor for AT biosynthesis) or to gallic acid (the precursor for HTs biosynthesis) using NADPH or NADP

resultsThe results have shown that the levels of ATs and HTs are negatively correlated in the outer fruit peels of 33 pomegranate accessions, in the outer peels of two fruits exposed to sunlight, and in those covered by paper bags. When calli obtained from the outer fruit peel were subjected to light/dark treatment and osmotic stresses (imposed by different sucrose concentrations), it was shown that light with high sucrose promotes the synthesis of ATs, while dark at the same sucrose concentration promotes the synthesis of HTs. To verify the role of SDH, six PgSDHs (PgSDH1, PgSDH3-1,2, PgSDH3a-1,2 and PgSDH4) were identified in pomegranate. The expression of PgSDH1, which presumably contributes to shikimate biosynthesis, was relatively constant at different sucrose concentrations. However, the transcript levels of PgSDH3s and PgSDH4 increased with the accumulation of gallic acid and HTs under osmotic stress, which apparently accumulates to protect the cells from the stress.

conclusionsThe results strongly suggest that the biosynthesis of HTs and ATs competes for the same substrate, 3-DHS, and that SDH activity is regulated not only by the NADPH/NADP

Indexed as

Alcohol OxidoreductasesAnthocyaninsFruitHydrolyzable TanninsPomegranateAlcohol OxidoreductasesAnthocyaninsHydrolyzable TanninsShikimate dehydrogenaseAnthocyaninsHydrolysable tanninsOsmotic stressOuter peelPeel-tissue culturePomegranateShikimate dehydrogenase

Identifiers

PMID31694546
PMCPMC6836501
OpenAlexW2989418407

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.