Evidence map›Paper›PMID 31694530›Full record

ArticleBMC genomics2019

RNA-seq analysis provides insights into cold stress responses of Xanthomonas citri pv. citri.

Jin-Xing Liao, Kai-Huai Li, Jin-Pei Wang, Jia-Ru Deng, Qiong-Guang Liu, Chang-Qing Chang

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. MicroRNA2871b of Dongxiang Wild Rice (International journal of molecular sciences · 2023
    Article
  5. TheFrontiers in microbiology · 2022
    Article
  6. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jin-Xing LiaoIntegrative Microbiology Research Centre, South China Agricultural University, No. 483 Wushan Road, Tianhe, Guangzhou, 510642, People's Republic of China.
Kai-Huai LiIntegrative Microbiology Research Centre, South China Agricultural University, No. 483 Wushan Road, Tianhe, Guangzhou, 510642, People's Republic of China.
Jin-Pei WangIntegrative Microbiology Research Centre, South China Agricultural University, No. 483 Wushan Road, Tianhe, Guangzhou, 510642, People's Republic of China.
Jia-Ru DengIntegrative Microbiology Research Centre, South China Agricultural University, No. 483 Wushan Road, Tianhe, Guangzhou, 510642, People's Republic of China.
Qiong-Guang LiuIntegrative Microbiology Research Centre, South China Agricultural University, No. 483 Wushan Road, Tianhe, Guangzhou, 510642, People's Republic of China.
Chang-Qing ChangIntegrative Microbiology Research Centre, South China Agricultural University, No. 483 Wushan Road, Tianhe, Guangzhou, 510642, People's Republic of China. changcq@scau.edu.cn.

Funding

The National Basic Research Program of China 2015CB150600
6 · The paper itself

Abstract

backgroundXanthomonas citri pv. citri (Xcc) is a citrus canker causing Gram-negative bacteria. Currently, little is known about the biological and molecular responses of Xcc to low temperatures.

resultsResults depicted that low temperature significantly reduced growth and increased biofilm formation and unsaturated fatty acid (UFA) ratio in Xcc. At low temperature Xcc formed branching structured motility. Global transcriptome analysis revealed that low temperature modulates multiple signaling networks and essential cellular processes such as carbon, nitrogen and fatty acid metabolism in Xcc. Differential expression of genes associated with type IV pilus system and pathogenesis are important cellular adaptive responses of Xcc to cold stress.

conclusionsStudy provides clear insights into biological characteristics and genome-wide transcriptional analysis based molecular mechanism of Xcc in response to low temperature.

Indexed as

RNA-SeqCold-Shock ResponseFlagellaGene Expression ProfilingMembrane LipidsXanthomonasMembrane LipidsBiofilm formationFatty acidsLow temperature stressMetabolismMotilityXanthomonas

Identifiers

PMID31694530
PMCPMC6833247

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.