Evidence map›Paper›PMID 31693446›Full record

ArticleMolecular biology of the cell2019

Steric regulation of tandem calponin homology domain actin-binding affinity.

Andrew R Harris, Brian Belardi, Pamela Jreij, Kathy Wei, Hengameh Shams, Andreas Bausch, Daniel A Fletcher

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Cellular mechanisms of traumatic brain injury.npj biological physics and mechanics · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Turn-On Protein Switches for Controlling Actin Binding in Cells.bioRxiv : the preprint server for biology · 2023
    Article
  11. Review
  12. Article
  13. Quantifying cytoskeletal organization from optical microscopy data.Frontiers in cell and developmental biology · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrew R HarrisDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA 94720.
Brian BelardiDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA 94720.
Pamela JreijDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA 94720.
Kathy WeiDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA 94720.
Hengameh ShamsDepartment of Mechanical Engineering, University of California, Berkeley, Berkeley, CA 94720.
Andreas BauschLehrstuhl für Biophysik (E27), Technische Universität München, Garching 85748, Germany.
Daniel A FletcherDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA 94720.

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS · 2017 to 2026
$28.6M
Mechanical Regulation of Actin NetworksR01GM074751 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI FLETCHER, DANIEL A · 2008 to 2015
$2.4M
Mechanical Regulation of Actin Binding ProteinsR01GM134137 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI FLETCHER, DANIEL A · 2019 to 2022
$1.5M
Investigating Tight Junction-Mediated Spatial Organization in Polarized Epithelia.F32GM115091 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BELARDI, BRIAN · 2015 to 2017
$163k
NIGMS NIH HHS F32 GM115091NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM134137
6 · The paper itself

Abstract

Tandem calponin homology (CH1-CH2) domains are common actin-binding domains in proteins that interact with and organize the actin cytoskeleton. Despite regions of high sequence similarity, CH1-CH2 domains can have remarkably different actin-binding properties, with disease-associated point mutants known to increase as well as decrease affinity for F-actin. To investigate features that affect CH1-CH2 affinity for F-actin in cells and in vitro, we perturbed the utrophin actin-binding domain by making point mutations at the CH1-CH2 interface, replacing the linker domain, and adding a polyethylene glycol (PEG) polymer to CH2. Consistent with a previous model describing CH2 as a steric negative regulator of actin binding, we find that utrophin CH1-CH2 affinity is both increased and decreased by modifications that change the effective "openness" of CH1 and CH2 in solution. We also identified interface mutations that caused a large increase in affinity without changing solution "openness," suggesting additional influences on affinity. Interestingly, we also observe nonuniform subcellular localization of utrophin CH1-CH2 that depends on the N-terminal flanking region but not on bulk affinity. These observations provide new insights into how small sequence changes, such as those found in diseases, can affect CH1-CH2 binding properties.

Indexed as

Actin CytoskeletonActinsBinding SitesCalcium-Binding ProteinsCalponinsCell Line, TumorCrystallography, X-RayHEK293 CellsHeLa CellsHumansMicrofilament ProteinsModels, MolecularProtein BindingProtein DomainsSequence Homology, Amino AcidUtrophinActinsCalcium-Binding ProteinsCalponinsMicrofilament ProteinsUtrophin

Identifiers

PMID31693446
PMCPMC6938246

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.