Evidence map›Paper›PMID 31692146›Full record

ArticleThe Plant journal : for cell and molecular biology2020

Combining GAL4 GFP enhancer trap with split luciferase to measure spatiotemporal promoter activity in Arabidopsis.

Ángela Román, John F Golz, Alex A R Webb, Ian A Graham, Michael J Haydon

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. An enhancer trap system to track developmental dynamics in Marchantia polymorpha.The Plant journal : for cell and molecular biology · 2023
    Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ángela RománSchool of BioSciences, University of Melbourne, Melbourne, Australia.ORCID 0000-0003-3457-999X
John F GolzSchool of BioSciences, University of Melbourne, Melbourne, Australia.ORCID 0000-0001-9478-5459
Alex A R WebbDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-0261-4375
Ian A GrahamDepartment of Biology, University of York, York, United Kingdom.ORCID 0000-0003-4007-1770
Michael J HaydonSchool of BioSciences, University of Melbourne, Melbourne, Australia.ORCID 0000-0003-2486-9387
The University of Melbourne · AUUniversity of Cambridge · GBUniversity of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H006826/1Biotechnology and Biological Sciences Research Council BB/L021188/1
6 · The paper itself

Abstract

In multicellular organisms different types of tissues have distinct gene expression profiles associated with specific function or structure of the cell. Quantification of gene expression in whole organs or whole organisms can give misleading information about levels or dynamics of expression in specific cell types. Tissue- or cell-specific analysis of gene expression has potential to enhance our understanding of gene regulation and interactions of cell signalling networks. The Arabidopsis circadian oscillator is a gene network which orchestrates rhythmic expression across the day/night cycle. There is heterogeneity between cell and tissue types of the composition and behaviour of the oscillator. In order to better understand the spatial and temporal patterns of gene expression, flexible tools are required. By combining a Gateway®-compatible split luciferase construct with a GAL4 GFP enhancer trap system, we describe a tissue-specific split luciferase assay for non-invasive detection of spatiotemporal gene expression in Arabidopsis. We demonstrate the utility of this enhancer trap-compatible split luciferase assay (ETSLA) system to investigate tissue-specific dynamics of circadian gene expression. We confirm spatial heterogeneity of circadian gene expression in Arabidopsis leaves and describe the resources available to investigate any gene of interest.

Indexed as

LuciferasesArabidopsisCircadian ClocksGene Expression Regulation, PlantGenes, PlantGenetic MarkersGenetic TechniquesPlants, Genetically ModifiedPolymerase Chain ReactionPromoter Regions, GeneticGenetic MarkersLuciferasesArabidopsiscircadian clockenhancer trapgene expressionluciferasetechnical advancetissue-specificity

Identifiers

PMID31692146
PMCPMC7217008
OpenAlexW2989492274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.