Evidence map›Paper›PMID 31690971›Full record

ArticleEuropean biophysics journal : EBJ2019

Thermodynamics of DNA: heat capacity changes on duplex unfolding.

Anatoliy Dragan, Peter Privalov, Colyn Crane-Robinson

Abstract read
In one paragraph

Article in European biophysics journal : EBJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Thermophysical Properties of a tRNA Isodecoder.The journal of physical chemistry. B · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Anion-specific structure and stability of guanidinium-bound DNA origami.Computational and structural biotechnology journal · 2022
    Article
  6. Thermodynamic basis of the α-helix and DNA duplex.European biophysics journal : EBJ · 2021
    Article
  7. Article
  8. Forces maintaining the DNA double helix.European biophysics journal : EBJ · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Anatoliy DraganInstitute of High Technologies, Taras Shevchenko National University of Kyiv, Kyiv, 01601, Ukraine.
Peter PrivalovDepartment of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA.
Colyn Crane-RobinsonBiophysics Laboratories, School of Biology, University of Portsmouth, Portsmouth, PO1 2DT, UK. colyn.crane-robinson@port.ac.uk.ORCID http://orcid.org/0000-0002-6853-5293

Funding

Ministry of Education and Science of Ukraine 0116U004757/16БФ07-03NIH HHS 105365
6 · The paper itself

Abstract

The heat capacity change, ΔCp, accompanying the folding/unfolding of macromolecules reflects their changing state of hydration. Thermal denaturation of the DNA duplex is characterized by an increase in ΔCp but of much lower magnitude than observed for proteins. To understand this difference, the changes in solvent accessible surface area (ΔASA) have been determined for unfolding the B-form DNA duplex into disordered single strands. These showed that the polar component represents ~ 55% of the total increase in ASA, in contrast to globular proteins of similar molecular weight for which the polar component is only about 1/3rd of the total. As the exposure of polar surface results in a decrease of ΔCp, this explains the much reduced heat capacity increase observed for DNA and emphasizes the enhanced role of polar interactions in maintaining duplex structure. Appreciation of a non-zero ΔCp for DNA has important consequences for the calculation of duplex melting temperatures (T

Indexed as

Hot TemperatureBase SequenceDNANucleic Acid DenaturationSurface PropertiesThermodynamicsDNADNAHeat capacityHydrationSolvent accessible surface areaSurface polarity

Identifiers

PMID31690971
PMCPMC6853854

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.