Evidence map›Paper›PMID 31690707›Full record

ArticlePlant physiology2020

Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants.

Mayumi Nakano, Kevin McCormick, Caghan Demirci, Feray Demirci, Sai Guna Ranjan Gurazada, Deepti Ramachandruni, Ayush Dusia, Joshua A Rothhaupt, Blake C Meyers

Abstract read
In one paragraph

Article in Plant physiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mayumi NakanoDonald Danforth Plant Science Center, St. Louis, Missouri 63132.ORCID 0000-0001-9317-4509
Kevin McCormickDelaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711.
Caghan DemirciDelaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711.
Feray DemirciDonald Danforth Plant Science Center, St. Louis, Missouri 63132.
Sai Guna Ranjan GurazadaDonald Danforth Plant Science Center, St. Louis, Missouri 63132.ORCID 0000-0002-3084-5683
Deepti RamachandruniDonald Danforth Plant Science Center, St. Louis, Missouri 63132.
Ayush DusiaDelaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711.ORCID 0000-0003-1310-8523
Joshua A RothhauptDonald Danforth Plant Science Center, St. Louis, Missouri 63132.
Blake C MeyersDonald Danforth Plant Science Center, St. Louis, Missouri 63132 bmeyers@danforthcenter.org.ORCID 0000-0003-3436-6097

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed public web sites and resources for data access, display, and analysis of plant small RNAs. These web sites are interconnected with related data types. The current generation of these informatics tools was developed for Illumina data, evolving over more than 15 years of improvements. Our online databases have customized web interfaces to uniquely handle and display RNA-derived data from diverse plant species, ranging from Arabidopsis (

Indexed as

ArabidopsisDatabases, GeneticGene Expression Regulation, PlantGenome, PlantGenomicsHigh-Throughput Nucleotide SequencingRNA, PlantSequence Analysis, RNATriticumRNA, Plant

Identifiers

PMID31690707
PMCPMC6945852

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.