Evidence map›Paper›PMID 31690329›Full record

ArticleMicrobial cell factories2019

Metabolic engineering and transcriptomic analysis of Saccharomyces cerevisiae producing p-coumaric acid from xylose.

Gheorghe M Borja, Angelica Rodriguez, Kate Campbell, Irina Borodina, Yun Chen, Jens Nielsen

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  13. Engineering the glyoxylate cycle for chemical bioproduction.Frontiers in bioengineering and biotechnology · 2022
    Review
  14. From Biomass-DerivedFrontiers in chemistry · 2022
    Review
  15. Yeast-Based Biosynthesis of Natural Products From Xylose.Frontiers in bioengineering and biotechnology · 2021
    Review
  16. Article
  17. Synthetic Biology Approaches to EngineerLife (Basel, Switzerland) · 2020
    Review
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Gheorghe M BorjaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Lyngby, Denmark.ORCID http://orcid.org/0000-0002-1601-8905
Angelica RodriguezThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Lyngby, Denmark.
Kate CampbellDepartment of Biology and Biological Engineering, Chalmers University of Technology, 412 96, Gothenburg, Sweden.
Irina BorodinaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Lyngby, Denmark.
Yun ChenDepartment of Biology and Biological Engineering, Chalmers University of Technology, 412 96, Gothenburg, Sweden.
Jens NielsenThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Lyngby, Denmark. nielsenj@chalmers.se.ORCID http://orcid.org/0000-0002-9955-6003
Chalmers University of Technology · SENovo Nordisk Foundation · DKUniversity of Copenhagen · DK

Funding

Horizon 2020 814408 (SHIKIFACTORY100)Novo Nordisk Fonden NNF10CC1016517
6 · The paper itself

Abstract

backgroundAromatic amino acids and their derivatives are valuable chemicals and are precursors for different industrially compounds. p-Coumaric acid is the main building block for complex secondary metabolites in commercial demand, such as flavonoids and polyphenols. Industrial scale production of this compound from yeast however remains challenging.

resultsUsing metabolic engineering and a systems biology approach, we developed a Saccharomyces cerevisiae platform strain able to produce 242 mg/L of p-coumaric acid from xylose. The same strain produced only 5.35 mg/L when cultivated with glucose as carbon source. To characterise this platform strain further, transcriptomic analysis was performed, comparing this strain's growth on xylose and glucose, revealing a strong up-regulation of the glyoxylate pathway alongside increased cell wall biosynthesis and unexpectedly a decrease in aromatic amino acid gene expression when xylose was used as carbon source.

conclusionsThe resulting S. cerevisiae strain represents a promising platform host for future production of p-coumaric using xylose as a carbon source.

Indexed as

Coumaric AcidsGene Expression ProfilingIndustrial MicrobiologyMetabolic EngineeringPropionatesSaccharomyces cerevisiaeXyloseCoumaric Acidsp-coumaric acidPropionatesXylosep-Coumaric acidRNAseqSaccharomyces cerevisiaeTranscriptomeXylose

Identifiers

PMID31690329
PMCPMC6833135
OpenAlexW2988948914

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.