Evidence map›Paper›PMID 31687803›Full record

ArticleBiomacromolecules2019

Filament Rigidity Vies with Mesh Size in Determining Anomalous Diffusion in Cytoskeleton.

Sylas J Anderson, Christelle Matsuda, Jonathan Garamella, Karthik Reddy Peddireddy, Rae M Robertson-Anderson, Ryan McGorty

Open access · greenAbstract read
In one paragraph

Article in Biomacromolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Quantifying Cytoskeleton Dynamics Using Differential Dynamic Microscopy.Journal of visualized experiments : JoVE · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sylas J AndersonDepartment of Physics and Biophysics , University of San Diego , San Diego , California 92110 , United States.
Christelle MatsudaDepartment of Physics and Biophysics , University of San Diego , San Diego , California 92110 , United States.
Jonathan GaramellaDepartment of Physics and Biophysics , University of San Diego , San Diego , California 92110 , United States.
Karthik Reddy PeddireddyDepartment of Physics and Biophysics , University of San Diego , San Diego , California 92110 , United States.ORCID 0000-0003-4282-5484
Rae M Robertson-AndersonDepartment of Physics and Biophysics , University of San Diego , San Diego , California 92110 , United States.ORCID 0000-0003-4475-4667
Ryan McGortyDepartment of Physics and Biophysics , University of San Diego , San Diego , California 92110 , United States.ORCID 0000-0002-6577-060X
University of San Diego · US

Funding

Biomimetic cytoskeleton and advanced microscopy to reveal intracellular DNA dynamics and distributionsR15GM123420 · NIGMS · UNIVERSITY OF SAN DIEGO · PI MCGORTY, RYAN, ROBERTSON-ANDERSON, RAE MARIE · 2017 to 2022
$939k
NIGMS NIH HHS R15 GM123420
6 · The paper itself

Abstract

The diffusion of microscopic particles through the cell, important to processes such as viral infection, gene delivery, and vesicle transport, is largely controlled by the complex cytoskeletal network, comprised of semiflexible actin filaments and rigid microtubules, that pervades the cytoplasm. By varying the relative concentrations of actin and microtubules, the cytoskeleton can display a host of different structural and dynamic properties that, in turn, impact the diffusion of particles through the composite network. Here, we couple single-particle tracking with differential dynamic microscopy to characterize the transport of microsphere tracers diffusing through composite in vitro networks with varying ratios of actin and microtubules. We analyze multiple complementary metrics for anomalous transport to show that particles exhibit anomalous subdiffusion in all networks, which our data suggest arises from caging by networks. Further, subdiffusive characteristics are markedly more pronounced in actin-rich networks, which exhibit similarly more prominent viscoelastic properties compared to microtubule-rich composites. While the smaller mesh size of actin-rich composites compared to microtubule-rich composites plays an important role in these results, the rigidity of the filaments comprising the network also influences the anomalous characteristics that we observe. Our results suggest that as microtubules in our composites are replaced with actin filaments, the decreasing filament rigidity competes with increasing network connectivity to drive anomalous transport.

Indexed as

Actin CytoskeletonActinsAnimalsRabbitsActins

Identifiers

PMID31687803
PMCPMC7370578
OpenAlexW2988764617

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.