Evidence map›Paper›PMID 31686499›Full record

ArticleBiochemistry2019

Helix N-Cap Residues Drive the Acid Unfolding That Is Essential in the Action of the Toxin Colicin A.

Yan Huang, Andrei Soliakov, Anton P Le Brun, Colin Macdonald, Christopher L Johnson, Alexandra S Solovyova, Helen Waller, Geoffrey R Moore, Jeremy H Lakey

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Yan HuangInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.
Andrei SoliakovInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.
Anton P Le BrunInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.
Colin MacdonaldDepartment of Chemistry Centre for Structural & Molecular Biology, School of Chemistry , University of East Anglia , Norwich Research Park , Norwich NR4 7TJ , U.K.
Christopher L JohnsonInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.ORCID 0000-0002-7158-4790
Alexandra S SolovyovaInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.
Helen WallerInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.
Geoffrey R MooreDepartment of Chemistry Centre for Structural & Molecular Biology, School of Chemistry , University of East Anglia , Norwich Research Park , Norwich NR4 7TJ , U.K.
Jeremy H LakeyInstitute for Cell and Molecular Biosciences, The Medical School , Newcastle University , Framlington Place , Newcastle-upon-Tyne NE2 4HH , U.K.ORCID 0000-0003-4646-9085
Newcastle University · GBUniversity of East Anglia · GBAustralian Nuclear Science and Technology Organisation · AUWuhan University · CN

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 064345Wellcome Trust 093581
6 · The paper itself

Abstract

Numerous bacterial toxins and other virulence factors use low pH as a trigger to convert from water-soluble to membrane-inserted states. In the case of colicins, the pore-forming domain of colicin A (ColA-P) has been shown both to undergo a clear acidic unfolding transition and to require acidic lipids in the cytoplasmic membrane, whereas its close homologue colicin N shows neither behavior. Compared to that of ColN-P, the ColA-P primary structure reveals the replacement of several uncharged residues with aspartyl residues, which upon replacement with alanine induce an unfolded state at neutral pH. Here we investigate ColA-P's structural requirement for these critical aspartyl residues that are largely situated at the N-termini of α helices. As previously shown in model peptides, the charged carboxylate side chain can act as a stabilizing helix N-Cap group by interacting with free amide hydrogen bond donors. Because this could explain ColA-P destabilization when the aspartyl residues are protonated or replaced with alanyl residues, we test the hypothesis by inserting asparagine, glutamine, and glutamate residues at these sites. We combine urea (fluorescence and circular dichroism) and thermal (circular dichroism and differential scanning calorimetry) denaturation experiments with

Indexed as

Amino Acid MotifsAmino Acid SequenceCircular DichroismColicinsModels, MolecularProtein DenaturationProtein FoldingSequence AlignmentColicins

Identifiers

PMID31686499
PMCPMC6899464
OpenAlexW2984251333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.