Evidence map›Paper›PMID 31685916›Full record

ArticleScientific reports2019

Non-typeable Haemophilus influenzae isolates from patients with chronic obstructive pulmonary disease contain new phase-variable modA methyltransferase alleles controlling phasevarions.

John M Atack, Timothy F Murphy, Melinda M Pettigrew, Kate L Seib, Michael P Jennings

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Phasevarions inMicrobiology spectrum · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Gene Expression Regulation in Airway Pathogens: Importance for Otitis Media.Frontiers in cellular and infection microbiology · 2022
    Review
  7. Learning from -omics strategies applied to uncoverComputational and structural biotechnology journal · 2021
    Review
  8. A Bacterial Epigenetic Switch in Non-typeableFrontiers in cellular and infection microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

John M AtackInstitute for Glycomics, Griffith University, Gold Coast, Queensland, 4222, Australia.
Timothy F MurphyClinical and Translational Research Center, University at Buffalo, State University of New York, 875 Ellicott Street, Buffalo, NY, 14203, USA.
Melinda M PettigrewYale School of Public Health, New Haven, CT, USA.
Kate L SeibInstitute for Glycomics, Griffith University, Gold Coast, Queensland, 4222, Australia.ORCID http://orcid.org/0000-0002-7094-3528
Michael P JenningsInstitute for Glycomics, Griffith University, Gold Coast, Queensland, 4222, Australia. m.jennings@griffith.edu.au.
Griffith University · AUUniversity at Buffalo, State University of New York · USYale University · US

Funding

Persistent H. influenzae in COPD - virulence, vaccines and antibiotic resistanceR01AI019641 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 1985 to 2023
$7.9M
NIAID NIH HHS R01 AI019641
6 · The paper itself

Abstract

Phasevarions (phase-variable regulons) are emerging as an important area of bacterial gene regulation. Many bacterial pathogens contain phasevarions, with gene expression controlled by the phase-variable expression of DNA methyltransferases via epigenetic mechanisms. Non-typeable Haemophilus influenzae (NTHi) contains the phase-variable methyltransferase modA, of which multiple allelic variants exist (modA1-21). We have previously demonstrated 5 of 21 these modA alleles are overrepresented in NTHi strains isolated from children with middle ear infections. In this study we investigated the modA allele distribution in NTHi strains isolated from patients with chronic obstructive pulmonary disease, COPD. We demonstrate that the distribution of modA alleles in a large panel of COPD isolates is different to the distribution seen in middle ear infections, suggesting different modA alleles may provide distinct advantages in the differing niches of the middle ear and COPD airways. We also identified two new phase-variable modA alleles - modA15 and modA18 - and demonstrate that these alleles methylate distinct DNA sequences and control unique phasevarions. The modA15 and modA18 alleles have only been observed in COPD isolates, indicating that these two alleles may be markers for isolates likely to cause exacerbations of COPD.

Indexed as

AllelesDNA MethylationGene Expression Regulation, BacterialGenotypeHaemophilus InfectionsHaemophilus influenzaeHumansPeriplasmic Binding ProteinsPulmonary Disease, Chronic ObstructiveSequence Analysis, DNAPeriplasmic Binding Proteins

Identifiers

PMID31685916
PMCPMC6828955
OpenAlexW2989417943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.