Evidence map›Paper›PMID 31685873›Full record

ArticleScientific reports2019

Biochemical characterisation of four rhamnosidases from thermophilic bacteria of the genera Thermotoga, Caldicellulosiruptor and Thermoclostridium.

Melanie Baudrexl, Wolfgang H Schwarz, Vladimir V Zverlov, Wolfgang Liebl

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. α-L-rhamnosidase: production, properties, and applications.World journal of microbiology & biotechnology · 2023
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Melanie BaudrexlTechnical University of Munich, Department of Microbiology, Emil-Ramann-Str. 4, 85354, Freising, Germany.ORCID http://orcid.org/0000-0002-7000-8425
Wolfgang H SchwarzAspratis GmbH, Hübnerstr. 11, 80637, München, Germany.ORCID http://orcid.org/0000-0001-9290-8558
Vladimir V ZverlovTechnical University of Munich, Department of Microbiology, Emil-Ramann-Str. 4, 85354, Freising, Germany. vladimir.zverlov@tum.de.ORCID http://orcid.org/0000-0002-2392-2791
Wolfgang LieblTechnical University of Munich, Department of Microbiology, Emil-Ramann-Str. 4, 85354, Freising, Germany. wliebl@wzw.tum.de.ORCID http://orcid.org/0000-0002-8421-2478
Technical University of Munich · DEKurchatov Institute · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbohydrate active enzymes are classified in databases based on sequence and structural similarity. However, their function can vary considerably within a similarity-based enzyme family, which makes biochemical characterisation indispensable to unravel their physiological role and to arrive at a meaningful annotation of the corresponding genes. In this study, we biochemically characterised the four related enzymes Tm_Ram106B, Tn_Ram106B, Cb_Ram106B and Ts_Ram106B from the thermophilic bacteria Thermotoga maritima MSB8, Thermotoga neapolitana Z2706-MC24, Caldicellulosiruptor bescii DSM 6725 and Thermoclostridium stercorarium DSM 8532, respectively, as α-L-rhamnosidases. Cobalt, nickel, manganese and magnesium ions stimulated while EDTA and EGTA inhibited all four enzymes. The kinetic parameters such as K

Indexed as

BacillotaBacterial ProteinsCaldicellulosiruptorCloning, MolecularCobaltEdetic AcidEubacterialesFlavanonesGlycoside HydrolasesHydrogen-Ion ConcentrationInhibitory Concentration 50KineticsRecombinant ProteinsRhamnoseSubstrate SpecificityTemperaturealpha-L-rhamnosidaseBacterial ProteinsCobaltEdetic AcidFlavanonesGlycoside HydrolasesnaringinRecombinant ProteinsRhamnose

Identifiers

PMID31685873
PMCPMC6828813
OpenAlexW2984512402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.