Evidence map›Paper›PMID 31684996›Full record

ArticleGenome biology2019

Genetic regulation of gene expression and splicing during a 10-year period of human aging.

Brunilda Balliu, Matthew Durrant, Olivia de Goede, Nathan Abell, Xin Li, Boxiang Liu, Michael J Gloudemans, Naomi L Cook, Kevin S Smith, David A Knowles and 8 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 81 citations in OpenAlex.

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  15. Time is ticking faster for long genes in aging.Trends in genetics : TIG · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 3 countries.

Brunilda BalliuDepartment of Pathology, Stanford University School of Medicine, Stanford, USA. bballiu@stanford.edu.ORCID 0000-0001-8953-804X
Matthew DurrantDepartment of Genetics, Stanford University School of Medicine, Stanford, USA.
Olivia de GoedeDepartment of Genetics, Stanford University School of Medicine, Stanford, USA.
Nathan AbellDepartment of Genetics, Stanford University School of Medicine, Stanford, USA.
Xin LiDepartment of Pathology, Stanford University School of Medicine, Stanford, USA.
Boxiang LiuDepartment of Biology, Stanford University School of Medicine, Stanford, USA.
Michael J GloudemansDepartment of Genetics, Stanford University School of Medicine, Stanford, USA.
Naomi L CookDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.
Kevin S SmithDepartment of Pathology, Stanford University School of Medicine, Stanford, USA.
David A KnowlesNew York Genome Center, New York, USA.
Mauro PalaDipartimento di Scienze Biomediche, Universita di Sassari, Sassari, Italy.
Francesco CuccaDipartimento di Scienze Biomediche, Universita di Sassari, Sassari, Italy.
David SchlessingerLaboratory of Genetics, National Institute on Aging, Maryland, USA.
Siddhartha JaiswalDepartment of Pathology, Stanford University School of Medicine, Stanford, USA.
Chiara SabattiDepartment of Biomedical Data Science, Stanford University School of Medicine, Stanford, USA.
Lars LindDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.
Erik IngelssonDepartment of Medicine, Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford, USA. eriking@stanford.edu.
Stephen B MontgomeryDepartment of Pathology, Stanford University School of Medicine, Stanford, USA. smontgom@stanford.edu.
Stanford University · USStanford Medicine · USUniversity of Sassari · ITUppsala University · SECardiovascular Institute of the South · USNational Institute on Aging · USNew York Genome Center · US

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
Stanford Islet Research CoreP30DK116074 · NIDDK · STANFORD UNIVERSITY · PI Seung K Kim · 2017 to 2026
$19.5M
Predicting causal non-coding variants in a founder populationR01HG008150 · NHGRI · STANFORD UNIVERSITY · PI MONTGOMERY, STEPHEN · 2015 to 2017
$1.4M
Integrative multi-omics in whole genome studies of HLBS disordersR01HL142015 · NHLBI · STANFORD UNIVERSITY · PI MONTGOMERY, STEPHEN · 2018 to 2019
$882k
NHGRI NIH HHS HG008150NHGRI NIH HHS R01 HG008150NHLBI NIH HHS R01 HL142015NIDDK NIH HHS P30 DK116074NLM NIH HHS T15 LM007033
6 · The paper itself

Abstract

backgroundMolecular and cellular changes are intrinsic to aging and age-related diseases. Prior cross-sectional studies have investigated the combined effects of age and genetics on gene expression and alternative splicing; however, there has been no long-term, longitudinal characterization of these molecular changes, especially in older age.

resultsWe perform RNA sequencing in whole blood from the same individuals at ages 70 and 80 to quantify how gene expression, alternative splicing, and their genetic regulation are altered during this 10-year period of advanced aging at a population and individual level. We observe that individuals are more similar to their own expression profiles later in life than profiles of other individuals their own age. We identify 1291 and 294 genes differentially expressed and alternatively spliced with age, as well as 529 genes with outlying individual trajectories. Further, we observe a strong correlation of genetic effects on expression and splicing between the two ages, with a small subset of tested genes showing a reduction in genetic associations with expression and splicing in older age.

conclusionsThese findings demonstrate that, although the transcriptome and its genetic regulation is mostly stable late in life, a small subset of genes is dynamic and is characterized by a reduction in genetic regulation, most likely due to increasing environmental variance with age.

Indexed as

Alternative SplicingGene Expression RegulationAgedAged, 80 and overAgingFemaleHumansMaleAgingAlternative splicingGene expressionGene regulationLongevity

Identifiers

PMID31684996
PMCPMC6827221
OpenAlexW2985398088

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.