Evidence map›Paper›PMID 31684971›Full record

ArticleBMC medical genomics2019

Detection of fetal trisomy and single gene disease by massively parallel sequencing of extracellular vesicle DNA in maternal plasma: a proof-of-concept validation.

Weiting Zhang, Sen Lu, Dandan Pu, Haiping Zhang, Lin Yang, Peng Zeng, Fengxia Su, Zhichao Chen, Mei Guo, Ying Gu and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 3 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 3 syntheses or guidelines pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Liquid Biopsy in Endometriosis: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
  3. Pooled it
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  15. Tetraspanins, More than Markers of Extracellular Vesicles in Reproduction.International journal of molecular sciences · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Weiting ZhangBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Sen LuBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Dandan PuBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Haiping ZhangBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Lin YangBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Peng ZengBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Fengxia SuBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Zhichao ChenBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Mei GuoBGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China.
Ying GuBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China.
Yanmei LuoPrenatal Diagnosis Center, Department of Gynecology & Obstetrics, Southwest Hospital, the Third Military Medical University (Army Medical University), Chongqing, China.
Huamei HuPrenatal Diagnosis Center, Department of Gynecology & Obstetrics, Southwest Hospital, the Third Military Medical University (Army Medical University), Chongqing, China.
Yanping LuDepartment of Obstetrics and Gynecology, Chinese PLA General Hospital, Beijing, 100853, China.
Fang ChenBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China. fangchen@genomics.cn.
Ya GaoBGI-Shenzhen, Beishan Industrial Zone, Shenzhen, 518083, China. gaoya@genomics.cn.
China National GeneBank · CNArmy Medical University · CNBGI GenomicsBGI Group (China) · CNChinese PLA General Hospital · CNSouthwest Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDuring human pregnancy, placental trophectoderm cells release extracellular vesicles (EVs) into maternal circulation. Trophoblasts also give rise to cell-free DNA (cfDNA) in maternal blood, and has been used for noninvasive prenatal screening for chromosomal aneuploidy. We intended to prove the existence of DNA in the EVs (evDNA) of maternal blood, and compared evDNA with plasma cfDNA in terms of genome distribution, fragment length, and the possibility of detecting genetic diseases.

methodsMaternal blood from 20 euploid pregnancies, 9 T21 pregnancies, 3 T18 pregnancies, 1 T13 pregnancy, and 2 pregnancies with FGFR3 mutations were obtained. EVs were separated from maternal plasma, and confirmed by transmission electronic microscopy (TEM), western blotting, and flow cytometry (FACS). evDNA was extracted and its fetal origin was confirmed by quantitative PCR (qPCR). Pair-end (PE) whole genome sequencing was performed to characterize evDNA, and the results were compared with that of cfDNA. The fetal risk of aneuploidy and monogenic diseases was analyzed using the evDNA sequencing data.

resultsEVs separated from maternal plasma were confirmed with morphology by TEM, and protein markers of CD9, CD63, CD81 as well as the placental specific protein placental alkaline phosphatase (PLAP) were confirmed by western blotting or flow cytometry. EvDNA could be successfully extracted for qPCR and sequencing from the plasma EVs. Sequencing data showed that evDNA span on all 23 pairs of chromosomes and mitochondria, sharing a similar distribution pattern and higher GC content comparing with cfDNA. EvDNA showed shorter fragments yet lower fetal fraction than cfDNA. EvDNA could be used to correctly determine fetal gender, trisomies, and de novo FGFR3 mutations.

conclusionsWe proved that fetal DNA could be detected in EVs separated from maternal plasma. EvDNA shared some similar features to plasma cfDNA, and could potentially be used to detect genetic diseases in fetus.

Indexed as

TrisomyAdultAneuploidyCell-Free Nucleic AcidsDNADown SyndromeExtracellular VesiclesFemaleFetusHigh-Throughput Nucleotide SequencingHumansPregnancyPrenatal DiagnosisReceptor, Fibroblast Growth Factor, Type 3Sequence Analysis, DNACell-Free Nucleic AcidsDNAFGFR3 protein, humanReceptor, Fibroblast Growth Factor, Type 3evDNAExtracellular vesiclesFetal trisomyMassively parallel sequencingPlasma cell-free DNASingle gene disease

Identifiers

PMID31684971
PMCPMC6829814
OpenAlexW2986287360

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.