Evidence map›Paper›PMID 31684873›Full record

ArticleBMC plant biology2019

Quantitative succinyl-proteome profiling of Chinese hickory (Carya cathayensis) during the grafting process.

Huwei Yuan, Juanjuan Chen, Ying Yang, Chenjia Shen, Dongbin Xu, Junfeng Wang, Daoliang Yan, Yi He, Bingsong Zheng

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  4. Impact of Lysine Succinylation on the Biology of Fungi.Current issues in molecular biology · 2024
    Review
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Huwei YuanState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Juanjuan ChenState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Ying YangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Chenjia ShenCollege of Life and Environmental Sciences Hangzhou Normal University, Hangzhou, 310036, People's Republic of China.
Dongbin XuState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Junfeng WangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Daoliang YanState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Yi HeState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China.
Bingsong ZhengState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, 311300, People's Republic of China. bszheng@zafu.edu.cn.
Zhejiang A & F University · CNHangzhou Normal University · CN

Funding

Translational Research in Oncology Training ProgramT32CA160001 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2011 to 2020
$2.0M
Fruit Innovation Team Project of Zhejiang Province 2016C02052-12Independent Research Project of State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University ZY20180208Independent Research Project of State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University ZY20180308Key Agricultural New Varieties Breeding Projects founded by Zhejiang Province Science and Technology Department 2016C02052-13Key Project of Zhejiang Provincial Natural Science Foundation LZ18C160001Key Research and Development Program of Zhejiang Province 2018C02004National High Technology Research and Development Program of China (863 Program) 2013AA102605National Key Research and Development Program of China 2018YFD1000600National Key Research and Development Program of China 2018YFD1000604National Natural Science Foundation of China 31070604National Natural Science Foundation of China 31270716National Natural Science Foundation of China 31470683Open Foundation of First-class Discipline of Forestry, Zhejiang Province 201703Open Foundation of State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University KF201708The First-class General Financial Grant from the China Postdoctoral Science Foundation 2017M610377Zhejiang Provincial Natural Science Foundation for Distinguished Young Scholar LR13C160001Zhejiang Provincial Natural Science Foundation of China LY19C160001
6 · The paper itself

Abstract

backgroundChinese hickory (Carya cathayensis) is a popular nut plant having high economic value. Grafting is applied to accelerate the transition from vegetative phase to reproductive phase. Lysine succinylation occurs frequently in the proteins associated with metabolic pathways, which may participate in the regulation of the grafting process. However, the exact regulatory mechanism underlying grafting process in Chinese hickory has not been studied at post-translational modification level.

resultsA comprehensive proteome-wide lysine succinylation profiling of Chinese hickory was explored by a newly developed method combining affinity enrichment and high-resolution LC-MS/MS. In total, 259 succinylation sites in 202 proteins were identified, representing the first comprehensive lysine succinylome in Chinese hickory. The succinylation was biased to occur in the cytosolic proteins of Chinese hickory. Moreover, four conserved succinylation motifs were identified in the succinylated peptides. Comparison of two grafting stages of Chinese hickory revealed that the differential expressed succinylated proteins were mainly involved in sugar metabolism, carbon fixation, amino acid metabolism and plant-pathogen interaction. Besides, seven heat shock proteins (HSPs) with 11 succinylation sites were also identified, all of which were observed to be up-regulated during the grafting process.

conclusionsSuccinylation of the proteins involved in amino acid biosynthesis might be required for a successful grafting. Succinylated HSPs might play a role in stress tolerance of the grafted Chinese hickory plants. Our results can be a good resource for functional validation of the succinylated proteins and a starting point for the investigation of molecular mechanisms during lysine succinylation occurring at grafting site.

Indexed as

Protein Processing, Post-TranslationalProteomeCaryaChromatography, LiquidLysinePlant ProteinsTandem Mass SpectrometryLysinePlant ProteinsProteomeChinese hickoryGraftingHeat shock proteinsPost-translational modificationSuccinylation

Identifiers

PMID31684873
PMCPMC6829946
OpenAlexW2983096165

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.