Evidence map›Paper›PMID 31683818›Full record

ArticleCancers2019

Segmentation and Grade Prediction of Colon Cancer Digital Pathology Images Across Multiple Institutions.

Saima Rathore, Muhammad Aksam Iftikhar, Ahmad Chaddad, Tamim Niazi, Thomas Karasic, Michel Bilello

Abstract read
In one paragraph

Article in Cancers, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Role of artificial intelligence in digital pathology for gynecological cancers.Computational and structural biotechnology journal · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Saima RathoreCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA 19104, USA. saima.rathore@pennmedicine.upenn.edu.
Muhammad Aksam IftikharDepartment of Computer Science, COMSATS University Islamabad, Lahore Campus, Lahore 54000, Pakistan. aksam.iftikhar@gmail.com.
Ahmad ChaddadDivision of Radiation Oncology, Department of Oncology, McGill University, Montreal, QC H3S 1Y9, Canada. ahmad.chaddad@mail.mcgill.ca.ORCID 0000-0003-3402-9576
Tamim NiaziDivision of Radiation Oncology, Department of Oncology, McGill University, Montreal, QC H3S 1Y9, Canada. tniazi@jgh.mcgill.ca.
Thomas KarasicDepartment of Medicine, Division of Hematology/Oncology, University of Pennsylvania, Philadelphia, PA 19104, USA. Thomas.Karasic@pennmedicine.upenn.edu.
Michel BilelloCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA 19104, USA. michel.bilello@uphs.upenn.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Distinguishing benign from malignant disease is a primary challenge for colon histopathologists. Current clinical methods rely on qualitative visual analysis of features such as glandular architecture and size that exist on a continuum from benign to malignant. Consequently, discordance between histopathologists is common. To provide more reliable analysis of colon specimens, we propose an end-to-end computational pathology pipeline that encompasses gland segmentation, cancer detection, and then further breaking down the malignant samples into different cancer grades. We propose a multi-step gland segmentation method, which models tissue components as ellipsoids. For cancer detection/grading, we encode cellular morphology, spatial architectural patterns of glands, and texture by extracting multi-scale features: (i) Gland-based: extracted from individual glands, (ii) local-patch-based: computed from randomly-selected image patches, and (iii) image-based: extracted from images, and employ a hierarchical ensemble-classification method. Using two datasets (Rawalpindi Medical College (RMC),

Indexed as

colon cancer detectioncolon cancer gradinggland segmentationhierarchical classification

Identifiers

PMID31683818
PMCPMC6896042

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.