Evidence map›Paper›PMID 31682960›Full record

ArticleInternational journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases2020

Detection of circulating hepatitis B virus immune escape and polymerase mutants among HBV-positive patients attending Institut Pasteur de Bangui, Central African Republic.

Giscard Wilfried Koyaweda, Juliette Rose Ongus, Eunice Machuka, John Juma, Rosaline Macharia, Narcisse Patrice Komas, Roger Pelle

Abstract read
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Article in International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Giscard Wilfried KoyawedaPan African University, Institute for Basic Sciences Technology and Innovation, Nairobi, Kenya.
Juliette Rose OngusJomo Kenyatta University of Agriculture and Technology, Medical Laboratory Sciences Department, Nairobi, Kenya.
Eunice MachukaBiosciences eastern and central Africa International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya.
John JumaBiosciences eastern and central Africa International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya.
Rosaline MachariaCenter for Biotechnology and Bioinformatics, University of Nairobi, Nairobi, Kenya.
Narcisse Patrice KomasInstitut Pasteur de Bangui, Viral Hepatitis Laboratory, Bangui, Central African Republic.
Roger PelleJomo Kenyatta University of Agriculture and Technology, Medical Laboratory Sciences Department, Nairobi, Kenya. Electronic address: r.pelle@cgiar.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPrevious studies in the Central African Republic (CAR) have reported the presence of hepatitis B virus (HBV) recombinant genotype E/D and a suspicion of immune escape mutants (IEMs), without further investigation into their impact on prevention and diagnosis. Consequently, this study investigated HBV mutations among hepatitis B surface antigen (HBsAg)-positive patients attending Institut Pasteur de Bangui in the CAR.

methodsSera from a total of 118 HBsAg-positive patients with no previous history of HBV treatment or vaccination at the Institut Pasteur de Bangui, were sampled between 2017 and 2019. Subsequently, the region spanning the surface and polymerase genes of HBV was amplified by PCR and sequenced. HBV sequences were genotyped/subgenotyped by phylogenetic analysis and serotyped based on predicted amino acid residues at positions s122, s127, s140, s159, and s160. They were then analyzed for HBV IEMs and polymerase mutations.

resultsThe region spanning the surface and polymerase genes was successfully amplified and sequenced for 51 samples. Of the HBV sequences, 49 were genotype E and two were genotype A subgenotype A1; these were serotyped as ayw4 and ayw1, respectively. Potential IEMs sY100C, sA128V, and sM133T, and several polymerase mutants were identified.

conclusionsThis study raises awareness of the need for further studies to be conducted on a large scale to better understand HBV mutations for improved disease control and prevention strategies in the country.

Indexed as

AdolescentAdultBase SequenceCentral African RepublicDNA-Directed DNA PolymeraseFemaleGenotypeHepatitis BHepatitis B Surface AntigensHepatitis B virusHumansMaleMiddle AgedMutationPhylogenyPolymerase Chain ReactionDNA-Directed DNA PolymeraseHepatitis B Surface AntigensViral ProteinsCentral African RepublicGenotype/subgenotypeHepatitis B virusImmune escape mutants (IEMs)Polymerase mutantsSerotype

Identifiers

PMID31682960
PMCPMC6912157

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.