Evidence map›Paper›PMID 31682915›Full record

ArticleMolecular and cellular neurosciences2019

Hippocampal stimulation promotes intracellular Tip60 dynamics with concomitant genome reorganization and synaptic gene activation.

Ashley Karnay, Bhanu Chandra Karisetty, Mariah Beaver, Felice Elefant

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular neurosciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Tip60's Novel RNA-Binding Function Modulates Alternative Splicing of Pre-mRNA Targets Implicated in Alzheimer's Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ashley KarnayDepartment of Biology, Drexel University, Philadelphia, PA, USA; Department of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, PA, USA.
Bhanu Chandra KarisettyDepartment of Biology, Drexel University, Philadelphia, PA, USA.
Mariah BeaverDepartment of Biology, Drexel University, Philadelphia, PA, USA.
Felice ElefantDepartment of Biology, Drexel University, Philadelphia, PA, USA. Electronic address: fe22@drexel.edu.
Drexel University · US

Funding

Mechanisms underlying Tip60 HAT action in neuroprotection of cognitive functionR01NS095799 · NINDS · DREXEL UNIVERSITY · PI FELICE ELEFANT · 2017 to 2026
$2.7M
NINDS NIH HHS R01 NS095799
6 · The paper itself

Abstract

Genomic reorganizations mediating the engagement of target genes to transcription factories (TFs), characterized as specialized nuclear subcompartments enriched in hyperphosphorylated RNA polymerase II (RNAPII) and transcriptional regulators, act as an important layer of control in coordinating efficient gene transcription. However, their presence in hippocampal neurons and potential role in activity-dependent coregulation of genes within the brain remains unclear. Here, we investigate whether the well-characterized role for the histone acetyltransferase (HAT) Tip60 in mediating epigenetic control of inducible neuroplasticity genes involves TF associated chromatin reorganization in the hippocampus. We show that Tip60 shuttles into the nucleus following extracellular stimulation of rat hippocampal neurons with concomitant enhancement of Tip60 binding and activation of specific synaptic plasticity genes. Multicolor three-dimensional (3D) DNA fluorescent in situ hybridization (DNA-FISH) reveals that hippocampal stimulation mobilizes these same synaptic plasticity genes and Tip60 to RNAPII-rich TFs. Our data support a model by which external hippocampal stimulation promotes intracellular Tip60 HAT dynamics with concomitant TF associated genome reorganization to initiate Tip60mediated synaptic gene activation.

Indexed as

Action PotentialsActive Transport, Cell NucleusAnimalsCell NucleusCells, CulturedChromatin Assembly and DisassemblyFemaleHippocampusLysine Acetyltransferase 5MaleNeuronal PlasticityNeuronsRatsTranscription FactorsLysine Acetyltransferase 5Transcription FactorsActivity-dependent gene regulationHippocampal neuronsHistone acetyltransferase (HAT)KAT5Neuroplasticity genesTip60Transcription factories

Identifiers

PMID31682915
PMCPMC6879871
OpenAlexW2985448640

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.