Evidence map›Paper›PMID 31682403›Full record

ArticleACS chemical biology2019

Addition of Isocyanide-Containing Amino Acids to the Genetic Code for Protein Labeling and Activation.

Yuda Chen, Kuan-Lin Wu, Juan Tang, Axel Loredo, Jordan Clements, Jingqi Pei, Zane Peng, Ruchi Gupta, Xinlei Fang, Han Xiao

Abstract read
In one paragraph

Article in ACS chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

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  12. Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.Protein science : a publication of the Protein Society · 2022
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  17. Site-Specific Incorporation of a Photoactivatable Fluorescent Amino Acid.Chembiochem : a European journal of chemical biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Yuda ChenDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Kuan-Lin WuDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Juan TangDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Axel LoredoDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Jordan ClementsDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Jingqi PeiDepartment of Biosciences , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Zane PengDepartment of Biosciences , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Ruchi GuptaDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Xinlei FangDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.
Han XiaoDepartment of Chemistry , Rice University , 6100 Main Street , Houston , Texas 77005 , United States.ORCID 0000-0002-4311-971X
Rice University · US

Funding

Engineering Proteins with Noncanonical Amino AcidsR35GM133706 · NIGMS · RICE UNIVERSITY · PI Han Xiao · 2019 to 2026
$2.9M
NIGMS NIH HHS R35 GM133706
6 · The paper itself

Abstract

Site-specific introduction of bioorthogonal handles into biomolecules provides powerful tools for studying and manipulating the structures and functions of proteins. Recent advances in bioorthogonal chemistry demonstrate that tetrazine-based bioorthogonal cycloaddition is a particularly useful methodology due to its high reactivity, biological selectivity, and turn-on property for fluorescence imaging. Despite its broad applications in protein labeling and imaging, utilization of tetrazine-based bioorthogonal cycloaddition has been limited to date by the requirement of a hydrophobic strained alkene reactive moiety. Circumventing this structural requirement, we report the site-specific incorporation of noncanonical amino acids (ncAAs) with a small isocyanide (or isonitrile) group into proteins in both bacterial and mammalian cells. We showed that under physiological conditions and in the absence of a catalyst these isocyanide-containing ncAAs could react selectively with tetrazine molecules via [4 + 1]-cycloaddition, thus providing a versatile bioorthogonal handle for site-specific protein labeling and protein decaging. Significantly, these bioorthogonal reactions between isocyanides and tetrazines also provide a unique mechanism for the activation of tetrazine-quenched fluorophores. The addition of these isocyanide-containing ncAAs to the list of 20 commonly used, naturally occurring amino acids expands our repertoire of reagents for bioorthogonal chemistry, therefore enabling new biological applications ranging from protein labeling and imaging studies to the chemical activation of proteins.

Indexed as

Genetic CodeAmino AcidsAnimalsCatalysisCyanidesHydrophobic and Hydrophilic InteractionsMammalsProteinsAmino AcidsCyanidesProteins

Identifiers

PMID31682403
PMCPMC6925311
OpenAlexW2989491517

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.