Evidence map›Paper›PMID 31681842›Full record

ArticleScience advances2019

Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations.

Jeffrey P Spence, Yun S Song

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 196 citations in OpenAlex.

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  10. Evolution of genome-wide barriers to gene flow during complex speciation in rattlesnakes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  11. Census and genetic analysis of the United States marmoset population.bioRxiv : the preprint server for biology · 2026
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  16. Neural posterior estimation for population genetics.bioRxiv : the preprint server for biology · 2026
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  17. ThebioRxiv : the preprint server for biology · 2026
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  18. Article
  19. Article
  20. GENERAL MOMENT CLOSURE FOR THE NEUTRAL TWO-LOCUS WRIGHT-FISHER DYNAMICS.bioRxiv : the preprint server for biology · 2026
    Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Jeffrey P SpenceGraduate Group in Computational Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0002-3199-1447
Yun S SongComputer Science Division and Department of Statistics, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0002-0734-9868
Chan Zuckerberg Initiative (United States) · USUniversity of California, Berkeley · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Population Genetic Consequences of Recent Explosive Population Growth in HumansR01GM108805 · NIGMS · CORNELL UNIVERSITY · PI CLARK, ANDREW G, KEINAN, ALON · 2014 to 2017
$2.2M
NHGRI NIH HHS T32 HG000044NIGMS NIH HHS R01 GM108805
6 · The paper itself

Abstract

Fine-scale rates of meiotic recombination vary by orders of magnitude across the genome and differ between species and even populations. Studying cross-population differences has been stymied by the confounding effects of demographic history. To address this problem, we developed a demography-aware method to infer fine-scale recombination rates and applied it to 26 diverse human populations, inferring population-specific recombination maps. These maps recapitulate many aspects of the history of these populations including signatures of the trans-Atlantic slave trade and the Iberian colonization of the Americas. We also investigated modulators of the local recombination rate, finding further evidence that Polycomb group proteins and the trimethylation of H3K27 elevate recombination rates. Further differences in the recombination landscape across the genome and between populations are driven by variation in the gene that encodes the DNA binding protein PRDM9, and we quantify the weak effect of meiotic drive acting to remove its binding sites.

Indexed as

Chromosome MappingGenetics, PopulationRecombination, GeneticBinding SitesChromatinComputer SimulationDemographyGene ConversionHistone-Lysine N-MethyltransferaseHumansChromatinHistone-Lysine N-MethyltransferasePRDM9 protein, human

Identifiers

PMID31681842
PMCPMC6810367
OpenAlexW2981354404

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.