Evidence map›Paper›PMID 31681427›Full record

ArticleFrontiers in genetics2019

Cardiac and Skeletal Muscle Transcriptome Response to Heat Stress in Kenyan Chicken Ecotypes Adapted to Low and High Altitudes Reveal Differences in Thermal Tolerance and Stress Response.

Krishnamoorthy Srikanth, Himansu Kumar, Woncheoul Park, Mijeong Byun, Dajeong Lim, Steve Kemp, Marinus F W Te Pas, Jun-Mo Kim, Jong-Eun Park

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Krishnamoorthy SrikanthAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, South Korea.
Himansu KumarAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, South Korea.
Woncheoul ParkAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, South Korea.
Mijeong ByunAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, South Korea.
Dajeong LimAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, South Korea.
Steve KempAnimal Biosciences, International Livestock Research Institute (ILRI), Nairobi, Kenya.
Marinus F W Te PasWageningen UR Livestock Research, Animal Breeding and Genomics, Wageningen, Netherlands.
Jun-Mo KimDepartment of Animal Science and Technology, Chung-Ang University, Anseong, South Korea.
Jong-Eun ParkAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, South Korea.
National Institute of Animal Science · KRChung-Ang University · KRInternational Livestock Research Institute · KEWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat stress (HS) negatively affects chicken performance. Agricultural expansion will happen in regions that experience high ambient temperatures, where fast-growing commercial chickens are vulnerable. Indigenous chickens of such regions, due to generations of exposure to environmental challenges, might have higher thermal tolerance. In this study, two indigenous chicken ecotypes, from the hot and humid Mombasa (lowland) and the colder Naivasha (highland) regions, were used to investigate the effects of acute (5 h, 35°C) and chronic (3 days of 35°C for 8 h/day) HS on the cardiac and skeletal muscle, through RNA sequencing. The rectal temperature gain and the number of differentially expressed genes (DEGs) [False Discovery Rate (FDR) < 0.05] were two times higher in the acute stage than in the chronic stage in both ecotypes, suggesting that cyclic exposure to HS can lead to adaptation. A tissue- and stage-specific difference in response to HS was observed, with peroxisome proliferator-activated-receptor (PPAR) signaling and mitogen-activate protein kinase (MAPK) signaling pathways, enriched in heart and skeletal muscle, respectively, and the p53 pathway enriched only in the acute stage in both tissues. The acute and chronic stage DEGs were integrated by a region-specific gene coexpression network (GCN), and genes with the highest number of connections (hub genes) were identified. The hub genes in the lowland network were

Indexed as

heat stresshub genesMAPK signalingp53 signalingPPAR signalingRNA-Seq

Identifiers

PMID31681427
PMCPMC6798392
OpenAlexW2979977337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.