ArticleFrontiers in plant science2019
Helios: A Scalable 3D Plant and Environmental Biophysical Modeling Framework.
Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 69 citations in OpenAlex.
- Thermal image segmentation in weedy fields via synthetic RGB-trained models and GAN-based cross-modality alignment.Plant phenomics (Washington, D.C.) · 2026Article
- Leaf gas exchange measurement for steady-state stomatal conductance model calibration.The New phytologist · 2026Article
- MaizeField3D: A curated 3D point cloud and procedural model dataset of field-grown maize from a diversity panel.Plant phenomics (Washington, D.C.) · 2026Article
- Automated calibration of stomatal conductance models from thermal imagery by leveraging synthetic images generated from Helios 3D biophysical model simulations.Journal of experimental botany · 2026Article
- A vision language model for generating XML-based organ-level plant architecture representations of cowpea from simulated images.Frontiers in artificial intelligence · 2026Article
- Field-scale robotic phenotyping of three-dimensional wheat canopy architectural traits.Frontiers in plant science · 2026Article
- Tree shape and bearing shoot type jointly drive within-canopy differentiation of fruit quality and mineral element allocation in jujube.Frontiers in plant science · 2026Article
- Intercomparison of methods for estimating leaf inclination angle distribution with terrestrial lidar for broadleaf tree species.The New phytologist · 2025Article
- Acclimation of mango (Mangifera indica cv. Calypso) to canopy light gradients-scaling from leaf to canopy.Tree physiology · 2025Article
- Generation of labeled leaf point clouds for plants trait estimation.Plant phenomics (Washington, D.C.) · 2025Article
- Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Improving the 3D representation of plant architecture and parameterization efficiency of functional-structural tree models using terrestrial LiDAR data.AoB PLANTS · 2025Article
- Quantifying water-use efficiency in plant canopies with varying leaf angle and density distribution.Annals of botany · 2024Article
- Practical Considerations and Limitations of Using Leaf and Canopy Temperature Measurements as a Stomatal Conductance Proxy: Sensitivity across Environmental Conditions, Scale, and Sample Size.Plant phenomics (Washington, D.C.) · 2024Article
- Simulation of Automatically Annotated Visible and Multi-/Hyperspectral Images Using the Helios 3D Plant and Radiative Transfer Modeling Framework.Plant phenomics (Washington, D.C.) · 2024Article
- The Importance of Using Realistic 3D Canopy Models to Calculate Light Interception in the Field.Plant phenomics (Washington, D.C.) · 2023Article
- Crop/Plant Modeling Supports Plant Breeding: II. Guidance of Functional Plant Phenotyping for Trait Discovery.Plant phenomics (Washington, D.C.) · 2023Review
- Towards a Stochastic Model to Simulate Grapevine Architecture: A Case Study on Digitized Riesling Vines Considering Effects of Elevated COPlants (Basel, Switzerland) · 2022Article
- A Photosynthetic Light Acclimation Model Accounting for the Effects of Leaf Age, Chlorophyll Content, and Intra-Leaf Radiation Transfer.Frontiers in plant science · 2022Article
- Integrating terrestrial laser scanning with functional-structural plant models to investigate ecological and evolutionary processes of forest communities.Annals of botany · 2021Article
Corrections and comments
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Authors and funding
1 author at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This article presents an overview of Helios, a new three-dimensional (3D) plant and environmental modeling framework. Helios is a model coupling framework designed to provide maximum flexibility in integrating and running arbitrary 3D environmental system models. Users interact with Helios through a well-documented open-source C++ API. Version 1.0 comes with model plug-ins for radiation transport, the surface energy balance, stomatal conductance, photosynthesis, solar position, and procedural tree generation. Additional plug-ins are also available for visualizing model geometry and data and for processing and integrating LiDAR scanning data. Many of the plug-ins perform calculations on the graphics processing unit, which allows for efficient simulation of very large domains with high detail. An example modeling study is presented in which leaf-level heterogeneity in water usage and photosynthesis of an orchard is examined to understand how this leaf-scale variability contributes to whole-tree and -canopy fluxes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.