Evidence map›Paper›PMID 31680439›Full record

ArticleEMBO reports2019

Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress-dependent mRNAs.

Manuel Martín-Expósito, Maria-Eugenia Gas, Nada Mohamad, Carme Nuño-Cabanes, Ana Tejada-Colón, Pau Pascual-García, Lorena de la Fuente, Belén Chaves-Arquero, Jonathan Merran, Jeffry Corden and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Manuel Martín-ExpósitoGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.ORCID 0000-0002-0852-009X
Maria-Eugenia GasGene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain.
Nada MohamadSignal Transduction Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.
Carme Nuño-CabanesGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.
Ana Tejada-ColónGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.
Pau Pascual-GarcíaGene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain.
Lorena de la FuenteGenomics of Gene Expression Laboratory, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain.
Belén Chaves-ArqueroDepartment of Biological Physical Chemistry, Institute of Physical-Chemistry "Rocasolano" (CSIC), Madrid, Spain.ORCID 0000-0002-2761-2336
Jonathan MerranDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Jeffry CordenDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Ana ConesaGenetics Institute, University of Florida, Gainesville, FL, USA.
José Manuel Pérez-CañadillasDepartment of Biological Physical Chemistry, Institute of Physical-Chemistry "Rocasolano" (CSIC), Madrid, Spain.
Jerónimo BravoSignal Transduction Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.
Susana Rodríguez-NavarroGene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia (CSIC), Valencia, Spain.ORCID 0000-0001-7472-3111
Instituto de Biomedicina de Valencia · ESCentro de Investigacion Principe Felipe · ESInstituto de Química Física Blas Cabrera · ESJohns Hopkins University · USUniversity of Florida · US

Funding

Comunidad de Madrid (Madrid Autonomous Community) B2017/BMD-3770Generalitat Valenciana (Regional Government of Valencia) ACOMP2014/061Generalitat Valenciana (Regional Government of Valencia) PROM/2012/061Generalitat Valenciana (Regional Government of Valencia) PROMETEO 2016/093Ministerio de Ciencia, Innovación y Universidades (Ministry of Science, Innovation and Universities) PGC2018-099872-B-I00Ministerio de Economía, Industria y Competitividad, Gobierno de España (MINECO) BFU2014-57636Ministerio de Economía, Industria y Competitividad, Gobierno de España (MINECO) BFU2015-71978Ministerio de Economía, Industria y Competitividad, Gobierno de España (MINECO) CTQ2018-84371Ministerio de Economía, Industria y Competitividad, Gobierno de España (MINECO) SAF2015-67077-RMinisterio de Economía, Industria y Competitividad, Gobierno de España (MINECO) SAF2017-89901-R
6 · The paper itself

Abstract

RNA-binding proteins (RBPs) participate in all steps of gene expression, underscoring their potential as regulators of RNA homeostasis. We structurally and functionally characterize Mip6, a four-RNA recognition motif (RRM)-containing RBP, as a functional and physical interactor of the export factor Mex67. Mip6-RRM4 directly interacts with the ubiquitin-associated (UBA) domain of Mex67 through a loop containing tryptophan 442. Mip6 shuttles between the nucleus and the cytoplasm in a Mex67-dependent manner and concentrates in cytoplasmic foci under stress. Photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation experiments show preferential binding of Mip6 to mRNAs regulated by the stress-response Msn2/4 transcription factors. Consistent with this binding, MIP6 deletion affects their export and expression levels. Additionally, Mip6 interacts physically and/or functionally with proteins with a role in mRNA metabolism and transcription such as Rrp6, Xrn1, Sgf73, and Rpb1. These results reveal a novel role for Mip6 in the homeostasis of Msn2/4-dependent transcripts through its direct interaction with the Mex67 UBA domain.

Indexed as

Active Transport, Cell NucleusBinding SitesCell NucleusDNA-Binding ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsProtein BindingRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalTranscription FactorsDNA-Binding ProteinsMEX67 protein, S cerevisiaeMip6 protein, S cerevisiaeMSN2 protein, S cerevisiaeMSN4 protein, S cerevisiaeNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription FactorsMex67Mip6mRNA exportMsn2/4RNA-binding protein

Identifiers

PMID31680439
PMCPMC6893359
OpenAlexW2987293253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.