Evidence map›Paper›PMID 31680354›Full record

ArticleThe Plant journal : for cell and molecular biology2020

Vegetative desiccation tolerance in the resurrection plant Xerophyta humilis has not evolved through reactivation of the seed canonical LAFL regulatory network.

Rafe Lyall, Stephen A Schlebusch, Jessica Proctor, Mayur Prag, Steven G Hussey, Robert A Ingle, Nicola Illing

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Evolution of plant metabolism: the state-of-the-art.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Systems biology of resurrection plants.Cellular and molecular life sciences : CMLS · 2021
    Review
  14. Intertwined signatures of desiccation and drought tolerance in grasses.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. International journal of molecular sciences · 2020
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rafe LyallDepartment of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.
Stephen A SchlebuschDepartment of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.
Jessica ProctorDepartment of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.
Mayur PragDepartment of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.
Steven G HusseyDepartment of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa.
Robert A IngleDepartment of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.
Nicola IllingDepartment of Molecular and Cell Biology, University of Cape Town, Rondebosch, 7701, South Africa.
University of Cape Town · ZAUniversity of Pretoria · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been hypothesised that vegetative desiccation tolerance in resurrection plants evolved via reactivation of the canonical LAFL (i.e. LEC1, ABI3, FUS3 and LEC2) transcription factor (TF) network that activates the expression of genes during the maturation of orthodox seeds leading to desiccation tolerance of the plant embryo in most angiosperms. There is little direct evidence to support this, however, and the transcriptional changes that occur during seed maturation in resurrection plants have not previously been studied. Here we performed de novo transcriptome assembly for Xerophyta humilis, and analysed gene expression during seed maturation and vegetative desiccation. Our results indicate that differential expression of a set of 4205 genes is common to maturing seeds and desiccating leaves. This shared set of genes is enriched for gene ontology terms related to abiotic stress, including water stress and abscisic acid signalling, and includes many genes that are seed-specific in Arabidopsis thaliana and targets of ABI3. However, while we observed upregulation of orthologues of the canonical LAFL TFs and ABI5 during seed maturation, similar to what is seen in A. thaliana, this did not occur during desiccation of leaf tissue. Thus, reactivation of components of the seed desiccation program in X. humilis vegetative tissues likely involves alternative transcriptional regulators.

Indexed as

DehydrationGene Expression Regulation, PlantPandanaceaePlant ProteinsSeedsTranscription FactorsPlant ProteinsTranscription FactorsABI3desiccation toleranceLAFLresurrection plantseed maturationXerophyta humilisXerophyta viscosa

Identifiers

PMID31680354
PMCPMC7187197
OpenAlexW2984625041

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.