Evidence map›Paper›PMID 31679104›Full record

ArticleFood and environmental virology2020

Feasibility of the Bag-Mediated Filtration System for Environmental Surveillance of Poliovirus in Kenya.

Nicolette A Zhou, Christine S Fagnant-Sperati, Evans Komen, Benlick Mwangi, Johnstone Mukubi, James Nyangao, Joanne Hassan, Agnes Chepkurui, Caroline Maina, Walda B van Zyl and 15 more

Open access · hybridAbstract read
In one paragraph

Article in Food and environmental virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Environmental surveillance of pathogens in Africa.Applied and environmental microbiology · 2026
    Review
  2. Article
  3. Article
  4. Advance Warning and Response Systems in Kenya: A Scoping Review.medRxiv : the preprint server for health sciences · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 3 countries.

Nicolette A ZhouDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA, 98105, USA.
Christine S Fagnant-SperatiDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA, 98105, USA.
Evans KomenCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
Benlick MwangiCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
Johnstone MukubiCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
James NyangaoCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
Joanne HassanCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
Agnes ChepkuruiCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
Caroline MainaKenya Ministry of Health, Afya House, Cathedral Road, P.O. Box 30016, Nairobi, 00100, Kenya.
Walda B van ZylDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Arcadia, 0007, South Africa.
Peter N MatsapolaDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Arcadia, 0007, South Africa.
Marianne WolfaardtDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Arcadia, 0007, South Africa.
Fhatuwani B NgwanaDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Arcadia, 0007, South Africa.
Stacey Jeffries-MilesIHRC, Inc. (contracting agency to the Division of Viral Diseases, Centers for Diseases Control and Prevention, Atlanta, GA 30329, USA), 2 Ravinia Drive, Suite 1200, Atlanta, GA, 30329, USA.
Angela Coulliette-SalmondDivision of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Mailstop H17-6, Atlanta, GA, 30329, USA.
Silvia PeñarandaDivision of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Mailstop H17-6, Atlanta, GA, 30329, USA.
Jeffry H ShiraiDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA, 98105, USA.
Alexandra L KossikDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA, 98105, USA.
Nicola K BeckDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA, 98105, USA.
Robyn WilmouthPATH, 2201 Westlake Ave, Suite 200, Seattle, WA, 98121, USA.
David S BoylePATH, 2201 Westlake Ave, Suite 200, Seattle, WA, 98121, USA.
Cara C BurnsDivision of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Mailstop H17-6, Atlanta, GA, 30329, USA.
Maureen B TaylorDepartment of Medical Virology, Faculty of Health Sciences, University of Pretoria, Private Bag X323, Arcadia, 0007, South Africa.
Peter BorusCentre for Viral Research, Kenya Medical Research Institute, Mbagathi Road, P.O. Box 54628, Nairobi, 00200, Kenya.
John Scott MeschkeDepartment of Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA, 98105, USA. jmeschke@uw.edu.ORCID 0000-0002-8983-9042
Kenya Medical Research Institute · KEUniversity of Washington · USUniversity of Pretoria · ZACenters for Disease Control and Prevention · USProgram for Appropriate Technology in Health · USMinistry of Health · KE

Funding

Biostatistics, Epidemiologic & Bioinformatic Training in Environmental HealthT32ES015459 · NIEHS · UNIVERSITY OF WASHINGTON · PI June T. Spector · 2009 to 2026
$10.6M
NIEHS NIH HHS T32 ES015459
6 · The paper itself

Abstract

The bag-mediated filtration system (BMFS) was developed to facilitate poliovirus (PV) environmental surveillance, a supplement to acute flaccid paralysis surveillance in PV eradication efforts. From April to September 2015, environmental samples were collected from four sites in Nairobi, Kenya, and processed using two collection/concentration methodologies: BMFS (> 3 L filtered) and grab sample (1 L collected; 0.5 L concentrated) with two-phase separation. BMFS and two-phase samples were analyzed for PV by the standard World Health Organization poliovirus isolation algorithm followed by intratypic differentiation. BMFS samples were also analyzed by a cell culture independent real-time reverse transcription polymerase chain reaction (rRT-PCR) and an alternative cell culture method (integrated cell culture-rRT-PCR with PLC/PRF/5, L20B, and BGM cell lines). Sabin polioviruses were detected in a majority of samples using BMFS (37/42) and two-phase separation (32/42). There was statistically more frequent detection of Sabin-like PV type 3 in samples concentrated with BMFS (22/42) than by two-phase separation (14/42, p = 0.035), possibly due to greater effective volume assayed (870 mL vs. 150 mL). Despite this effective volume assayed, there was no statistical difference in Sabin-like PV type 1 and Sabin-like PV type 2 detection between these methods (9/42 vs. 8/42, p = 0.80 and 27/42 vs. 32/42, p = 0.18, respectively). This study demonstrated that BMFS can be used for PV environmental surveillance and established a feasible study design for future research.

Indexed as

Environmental MonitoringFeasibility StudiesFiltrationFresh WaterHumansKenyaPoliomyelitisPoliovirusBMFSEnvironmental monitoringEnvironmental surveillancePoliovirusTwo-phase separationWastewater

Identifiers

PMID31679104
PMCPMC7052051
OpenAlexW2985729324

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.