Evidence map›Paper›PMID 31678813›Full record

ReviewCurrent opinion in chemical biology2020

Imaging dynamic cell signaling in vivo with new classes of fluorescent reporters.

Xiaokun Shu

Open access · greenAbstract readReview
In one paragraph

Review in Current opinion in chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. MYC phase separation selectively modulates the transcriptome.Nature structural & molecular biology · 2024
    Article
  6. Article
  7. Phase separation of YAP-MAML2 differentially regulates the transcriptome.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Cell-type-specific, multicolor labeling of endogenous proteins with split fluorescent protein tags inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Xiaokun ShuDepartment of Pharmaceutical Chemistry, University of California - San Francisco, San Francisco, CA, United States; Cardiovascular Research Institute, University of California - San Francisco, San Francisco, CA, United States. Electronic address: xiaokun.shu@ucsf.edu.
University of California, San Francisco · US

Funding

EQUIPMENT for Designing a new class of fluorescent reporters for imaging dynamic cell signaling in live animalsR35GM131766 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHU, XIAOKUN · 2019 to 2025
$4.0M
Rational design of a genetically encoded infrared fluorescent protease reporterR01GM115399 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHU, XIAOKUN · 2015 to 2018
$1.3M
Rational design of fluorescent kinase reporters for visualizing dynamic kinase signaling in vivoR01GM127664 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHU, XIAOKUN · 2018 to 2019
$681k
NIGMS NIH HHS R01 GM115399NIGMS NIH HHS R01 GM127664NIGMS NIH HHS R35 GM131766
6 · The paper itself

Abstract

Dynamical features of cell signaling are the essence of living organisms. To understand animal development, it is fundamental to investigate signaling dynamics in vivo. Robust reporters are required to visualize spatial and temporal dynamics of enzyme activities and protein-protein interactions involved in signaling pathways. In this review, we summarize recent development in the design of new classes of fluorescent reporters for imaging dynamic activities of proteases, kinases, and protein-protein interactions. These reporters operate on new physical and/or chemical principles; achieve large dynamic range, high brightness, and fast kinetics; and reveal spatiotemporal dynamics of signaling that is correlated with developmental events such as embryonic morphogenesis in live animals including Drosophila and zebrafish. Therefore, many of these reporters are great tools for biological discovery and mechanistic understanding of animal development and disease progression.

Indexed as

AnimalsFluorescent DyesHumansImage Processing, Computer-AssistedOptical ImagingPeptide HydrolasesPhosphotransferasesProtein Interaction MapsSignal TransductionFluorescent DyesPeptide HydrolasesPhosphotransferasesAnimal developmentFluorescent reportersIn vivo imagingKinasesProteasesProtein-protein interactions

Identifiers

PMID31678813
PMCPMC7131868
OpenAlexW2988527579

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.