Evidence map›Paper›PMID 31675915›Full record

ArticleBMC evolutionary biology2019

Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic.

Takaaki Ono, Modesto Cruz, José A Jiménez Abreu, Hiroyuki Nagashima, Phawinee Subsomwong, Celso Hosking, Seiji Shiota, Rumiko Suzuki, Yoshio Yamaoka

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC evolutionary biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Genetic Diversity ofAdvanced biomedical research · 2022
    Article
  2. Discovery of unique AfricanWorld journal of gastroenterology · 2020
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Takaaki OnoDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Modesto CruzInstitute of Microbiology and Parasitology, Faculty of Science, Autonomous University of Santo Domingo, Santo Domingo, Dominican Republic.
José A Jiménez AbreuDominican-Japanese Digestive Disease Center, Dr Luis E. Aybar Health and Hygiene City, Santo Domingo, Dominican Republic.
Hiroyuki NagashimaDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Phawinee SubsomwongDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Celso HoskingInstitute of Microbiology and Parasitology, Faculty of Science, Autonomous University of Santo Domingo, Santo Domingo, Dominican Republic.
Seiji ShiotaDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Rumiko SuzukiDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Yoshio YamaokaDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan. yyamaoka@oita-u.ac.jp.ORCID 0000-0002-1222-5819
Oita University · JPUniversidad Autónoma de Santo Domingo · DOBaylor College of Medicine · US

Funding

REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

backgroundHelicobacter pylori, a bacterium that infects the human stomach, has high genetic diversity. Because its evolution is parallel to human, H. pylori is used as a tool to trace human migration. However, there are few studies about the relationship between phylogeography of H. pylori and its host human.

methodsWe examined both H. pylori DNA and the host mitochondrial DNA and Y-chromosome DNA obtained from a total 119 patients in the Dominican Republic, where human demography consists of various ancestries. DNA extracted from cultured H. pylori were analyzed by multi locus sequence typing. Mitochondrial DNA and Y-chromosome DNA were evaluated by haplogroup analyses.

resultsH. pylori strains were divided into 2 populations; 68 strains with African group (hpAfrica1) and 51 strains with European group (hpEurope). In Y-chromosomal haplogroup, European origin was dominant, whereas African origin was dominant both in H. pylori and in mtDNA haplogroup. These results supported the hypothesis that mother-to-child infection is predominant in H. pylori infection. The Amerindian type of mtDNA haplogroup was observed in 11.8% of the patients; however, Amerindian type (hspAmerind) of H. pylori was not observed. Although subpopulation type of most hpAfrica1 strains in Central America and South America were hybrid (hspWAfrica/hpEurope), most Dominican Republic hpAfrica1 strains were similar to those of African continent.

conclusionsGenetic features of H. pylori, mtDNA, and Y haplogroups reflect the history of colonial migration and slave trade in the Dominican Republic. Discrepancy between H. pylori and the host human genotypes support the hypothesis that adaptability of hspAmerind H. pylori strains are weaker than hpEurope strains. H. pylori strains in the Dominican Republic seem to contain larger proportion of African ancestry compared to other American continent strains.

Indexed as

Human MigrationAdultAgedChromosomes, Human, YDNA, MitochondrialDominican RepublicFemaleGenotypeHelicobacter InfectionsHelicobacter pyloriHuman GeneticsHumansInfectious Disease Transmission, VerticalMaleMiddle AgedMultilocus Sequence TypingDNA, MitochondrialDominican RepublicGenetic diversityHelicobacter pyloriHuman mitochondrial DNAHuman Y-chromosome DNAPhylogeographyPopulation structure

Identifiers

PMID31675915
PMCPMC6823972
OpenAlexW2982745618

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.