ArticlePloS one2019
Genomic comparison of diverse Salmonella serovars isolated from swine.
Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 34 citations in OpenAlex.
- A genomic framework for tracking antibiotic resistance genes: global dissemination ofAntimicrobial agents and chemotherapy · 2026Article
- The faecal microbiome and carriage of Salmonella in Australian captive pythons.FEMS microbiology ecology · 2026Article
- Draft genome sequences of multipleMicrobiology resource announcements · 2025Article
- Characterization and Antimicrobial Resistance of Non-TyphoidalMicroorganisms · 2025Article
- Antimicrobial Resistance Genotypes and Mobile Genetic Elements of Poultry-DerivedPathogens (Basel, Switzerland) · 2025Article
- Infection biology ofEcoSal Plus · 2024Review
- Emergence and Comparative Genome Analysis ofInternational journal of molecular sciences · 2024Article
- Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes.PLoS biology · 2024Article
- Article
- Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France.Scientific reports · 2024Article
- Draft genome sequences of twoMicrobiology resource announcements · 2024Article
- The Yin and Yang of pathogens and probiotics: interplay betweenFrontiers in microbiology · 2024Article
- An Overview of Antimicrobial Resistance Profiles of Publicly AvailableFoodborne pathogens and disease · 2023Article
- Physiological characteristics and virulence gene composition of selected serovars of seafood-borneVeterinary world · 2023Article
- Clinical and Environmental Vibrio cholerae Non-O1, Non-O139 Strains from Australia Have Similar Virulence and Antimicrobial Resistance Gene Profiles.Microbiology spectrum · 2023Article
- Antimicrobial resistance genes, virulence markers and prophage sequences inCurrent research in microbial sciences · 2022Article
- Genomic network analysis of environmental and livestock F-type plasmid populations.The ISME journal · 2021Article
- Recent Advances in the Detection of Antibiotic and Multi-Drug ResistantInternational journal of molecular sciences · 2021Review
- Discerning the Antimicrobial Resistance, Virulence, and Phylogenetic Relatedness ofFrontiers in microbiology · 2021Article
- Genomic Epidemiology ofFrontiers in veterinary science · 2020Article
Corrections and comments
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
Abstract
Food animals act as a reservoir for many foodborne pathogens. Salmonella enterica is one of the leading pathogens that cause food borne illness in a broad host range including animals and humans. They can also be associated with a single host species or a subset of hosts, due to genetic factors associated with colonization and infection. Adult swine are often asymptomatic carriers of a broad range of Salmonella servoars and can act as an important reservoir of infections for humans. In order to understand the genetic variations among different Salmonella serovars, Whole Genome Sequences (WGS) of fourteen Salmonella serovars from swine products were analyzed. More than 75% of the genes were part of the core genome in each isolate and the higher fraction of gene assign to different functional categories in dispensable genes indicated that these genes acquired for better adaptability and diversity. High concordance (97%) was detected between phenotypically confirmed antibiotic resistances and identified antibiotic resistance genes from WGS. The resistance determinants were mainly located on mobile genetic elements (MGE) on plasmids or integrated into the chromosome. Most of known and putative virulence genes were part of the core genome, but a small fraction were detected on MGE. Predicted integrated phage were highly diverse and many harbored virulence, metal resistance, or antibiotic resistance genes. CRISPR (Clustered regularly interspaced short palindromic repeats) patterns revealed the common ancestry or infection history among Salmonella serovars. Overall genomic analysis revealed a great deal of diversity among Salmonella serovars due to acquired genes that enable them to thrive and survive during infection.
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