Evidence map›Paper›PMID 31674906›Full record

ArticleeLife2019

Retro-2 protects cells from ricin toxicity by inhibiting ASNA1-mediated ER targeting and insertion of tail-anchored proteins.

David W Morgens, Charlene Chan, Andrew J Kane, Nicholas R Weir, Amy Li, Michael M Dubreuil, C Kimberly Tsui, Gaelen T Hess, Adam Lavertu, Kyuho Han and 10 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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  11. Structural insights into metazoan pretargeting GET complexes.Nature structural & molecular biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

David W Morgens *Department of Genetics, Stanford University, Stanford, United States.
Charlene Chan *Department of Molecular and Cellular Biology, Northwest Labs, Harvard University, Cambridge, United States.
Andrew J KaneDepartment of Molecular and Cellular Biology, Northwest Labs, Harvard University, Cambridge, United States.
Nicholas R WeirDepartment of Molecular and Cellular Biology, Northwest Labs, Harvard University, Cambridge, United States.ORCID 0000-0002-1797-849X
Amy LiDepartment of Genetics, Stanford University, Stanford, United States.
Michael M DubreuilProgram in Cancer Biology, Stanford University, Stanford, United States.
C Kimberly TsuiDepartment of Genetics, Stanford University, Stanford, United States.
Gaelen T HessDepartment of Genetics, Stanford University, Stanford, United States.
Adam LavertuBiomedical Informatics Training Program, Stanford University, Stanford, United States.
Kyuho HanDepartment of Genetics, Stanford University, Stanford, United States.
Nicole PolyakovDepartment of Molecular and Cellular Biology, Northwest Labs, Harvard University, Cambridge, United States.
Jing ZhouDepartment of Molecular and Cellular Biology, Northwest Labs, Harvard University, Cambridge, United States.
Emma L HandyDepartment of Chemistry, Brown University, Providence, United States.
Philip AlabiDepartment of Chemistry, Brown University, Providence, United States.
Amanda DombroskiDepartment of Chemistry, Brown University, Providence, United States.
David YaoDepartment of Genetics, Stanford University, Stanford, United States.
Russ B AltmanDepartment of Genetics, Stanford University, Stanford, United States.
Jason K SelloDepartment of Chemistry, Brown University, Providence, United States.
Vladimir DenicDepartment of Molecular and Cellular Biology, Northwest Labs, Harvard University, Cambridge, United States.ORCID 0000-0002-1982-7281
Michael C BassikDepartment of Genetics, Stanford University, Stanford, United States.ORCID 0000-0001-5185-8427
Stanford University · USHarvard University · USBrown University · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Mechanistic dissection of eukaryotic protein biogenesis and degradation pathwaysR35GM127136 · NIGMS · HARVARD UNIVERSITY · PI Vladimir Denic · 2018 to 2026
$5.0M
Accelerating drug development and repurposing using systematic genetic interactioDP2HD084069 · NICHD · STANFORD UNIVERSITY · PI BASSIK, MICHAEL C · 2014 to 2014
$2.4M
Biomedical Data Science Graduate Training at StanfordT32LM012409 · NLM · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2016 to 2020
$1.5M
National Science Foundation DGE-114747National Science Foundation DGE-1656518NCI NIH HHS T32 CA009302NHGRI NIH HHS T32 HG000044NICHD NIH HHS DP2 HD084069NIGMS NIH HHS 1R35GM127136NIGMS NIH HHS R35 GM127136NIH HHS 1DP2HD084069-01NIH HHS DP2HD084069NIH HHS T32 HG000044NLM NIH HHS T32 LM012409
6 · The paper itself

Abstract

The small molecule Retro-2 prevents ricin toxicity through a poorly-defined mechanism of action (MOA), which involves halting retrograde vesicle transport to the endoplasmic reticulum (ER). CRISPRi genetic interaction analysis revealed Retro-2 activity resembles disruption of the transmembrane domain recognition complex (TRC) pathway, which mediates post-translational ER-targeting and insertion of tail-anchored (TA) proteins, including SNAREs required for retrograde transport. Cell-based and in vitro assays show that Retro-2 blocks delivery of newly-synthesized TA-proteins to the ER-targeting factor ASNA1 (TRC40). An ASNA1 point mutant identified using CRISPR-mediated mutagenesis abolishes both the cytoprotective effect of Retro-2 against ricin and its inhibitory effect on ASNA1-mediated ER-targeting. Together, our work explains how Retro-2 prevents retrograde trafficking of toxins by inhibiting TA-protein targeting, describes a general CRISPR strategy for predicting the MOA of small molecules, and paves the way for drugging the TRC pathway to treat broad classes of viruses known to be inhibited by Retro-2.

Indexed as

Arsenite Transporting ATPasesBenzamidesEndoplasmic ReticulumHumansMembrane ProteinsProtein TransportRicinThiophenes2-(((5-methyl-2-thienyl)methylene)amino)-N-phenylbenzamideArsenite Transporting ATPasesBenzamidesGET3 protein, humanMembrane ProteinsRicinThiophenescell biologyCRISPRgeneticsgenomicshumanRetro-2TRC pathway

Identifiers

PMID31674906
PMCPMC6858068
OpenAlexW2988509520

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.