Evidence map›Paper›PMID 31673965›Full record

ArticleJournal of applied genetics2020

Interaction between CA repeat microsatellites and HIF1α regulated the transcriptional activity of porcine IGF1 promoter.

Hongwei Geng, Linlin Hao, Yunyun Cheng, Chunli Wang, Shan Huang, Wenzhen Wei, Rui Yang, Haoyang Li, Songcai Liu, Hao Yu and 1 more

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In one paragraph

Article in Journal of applied genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Hongwei GengCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Linlin HaoCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Yunyun ChengCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Chunli WangCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Shan HuangCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Wenzhen WeiCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Rui YangCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Haoyang LiCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China.
Songcai LiuCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China. songcai@jlu.edu.cn.
Hao YuCollege of Animal Science, Jilin University, 5333 Xi'an Road, Changchun, 130062, Jilin, China. yu_hao@jlu.edu.cn.
Huayi LuThe Second Hospital of Jilin University, 218 Ziqiang Street, Changchun, Jilin, 130041, China. lhy510@jlu.edu.cn.
Jilin University · CNSecond Affiliated Hospital of Jilin University · CN

Funding

National Natural Science Foundation of China 31672514Technological Development Plan of Jilin Province 20170101024JCTechnological Development Plan of Jilin Province 20190701070GH
6 · The paper itself

Abstract

Insulin-like growth factor 1 (IGF1) is pivotal in the regulation of animal growth. Highly polymorphic CA repeat microsatellites have been identified in the IGF1 promoter region of different breeds of pigs. Previous studies showed that CA repeat microsatellites are associated with circulating IGF1 level. However, the mechanisms by which CA repeat microsatellites regulate IGF1 expression remain unclear. This study aimed to detect the association of CA repeat microsatellites with the transcriptional regulation of porcine IGF1 and the possible mechanisms. Results revealed that the number of CA repeats in porcine IGF1 promoter was 14-18, and a promoter with 14 or 15 CA repeats had a higher transcriptional activity (P < 0.01). Transcription factor hypoxia-inducible factor 1 subunit alpha (HIF1α) was confirmed to bind to the binding site upstream of CA repeat microsatellites. The microsatellites with 14 or 15 CA repeats were more sensitive to changes in the HIF1α expression level (P < 0.01). These results suggested that CA repeat microsatellites and HIF1α affected the transcriptional activity of each other in the regulation of IGF1 expression, thereby implying an interaction between them. Overall, this study provided novel evidence for elucidating the effects of CA repeat microsatellites on the transcriptional regulation of porcine IGF1.

Indexed as

Gene Expression RegulationMicrosatellite RepeatsPromoter Regions, GeneticTranscription, GeneticAnimalsBinding SitesCells, CulturedHypoxia-Inducible Factor 1, alpha SubunitInsulin-Like Growth Factor IPolymorphism, GeneticProtein BindingSwineHypoxia-Inducible Factor 1, alpha SubunitInsulin-Like Growth Factor IHIF1αIGF1MicrosatellitePromoterTranscription

Identifiers

PMID31673965
OpenAlexW2985616803

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.