ArticleWorld journal of microbiology & biotechnology2019
Metagenomic study of endophytic bacterial community of sweet potato (Ipomoea batatas) cultivated in different soil and climatic conditions.
Article in World journal of microbiology & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- DNA extraction from sweetpotato (Molecular breeding : new strategies in plant improvement · 2026Article
- Dominance of Enterobacter spp. in Asymptomatic Sweet Potato Tubers Grown in Foot Rot-infested Fields.Microbes and environments · 2026Article
- Differences in the constituents of bacterial microbiota of soils collected from two fields of diverse potato blackleg and soft rot diseases incidences, a case study.Scientific reports · 2024Article
- Bacterial diversity, community structure and function in association of potato scabby tubers during storage in northern Thailand.Folia microbiologica · 2024Article
- Community structure of endophytic bacteria of Sargassum thubergii in the intertidal zone of Qingdao in China.AMB Express · 2024Article
- Biocontrol Screening of Endophytes: Applications and Limitations.Plants (Basel, Switzerland) · 2023Review
- Chemical Characterization and Metagenomic Identification of Endophytic Microbiome from South African Sunflower (Microorganisms · 2023Article
- Article
- Evaluating the Rhizosphere and Endophytic Microbiomes of a Bamboo Plant in Response to the Long-Term Application of Heavy Organic Amendment.Plants (Basel, Switzerland) · 2022Article
- Bacterial community structure of the sunflower (Plant signaling & behavior · 2021Article
- Bacterial Endophytes: The Hidden Actor in Plant Immune Responses against Biotic Stress.Plants (Basel, Switzerland) · 2021Review
- The Endophytic Microbiome as a Hotspot of Synergistic Interactions, with Prospects of Plant Growth Promotion.Biology · 2021Review
- Metagenomic profiling of the community structure, diversity, and nutrient pathways of bacterial endophytes in maize plant.Antonie van Leeuwenhoek · 2020Article
Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
The aim of this study was to clarify effects of soil and climatic conditions on community structure of sweet potato bacterial endophytes by applying locked nucleic acid oligonucleotide-PCR clamping technique and metagenomic analysis. For this purpose, the soil samples in three locations were transferred each other and sweet potato nursery plants from the same farm were cultivated for ca. 3 months. After removal of plastid, mitochondria and undefined sequences, the averaged numbers of retained sequences and operational taxonomic units per sample were 20,891 and 846, respectively. Proteobacteria (85.0%), Bacteroidetes (6.6%) and Actinobacteria (6.3%) were the three most dominant phyla, accounting for 97.9% of the reads, and γ-Proteobacteria (66.3%) being the most abundant. Top 10 genera represented 81.2% of the overall reads in which Pseudomonas (31.9-45.0%) being the most predominant. The overall endophytic bacterial communities were similar among the samples which indicated that the soil and the climatic conditions did not considerably affect the entire endophytic community. The original endophytic bacterial community might be kept during the cultivation period.
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