Evidence map›Paper›PMID 31673305›Full record

ArticleComputational and structural biotechnology journal2019

Investigation of Hot Spot Region in XIAP Inhibitor Binding Site by Fragment Molecular Orbital Method.

Hocheol Lim, Xuemei Jin, Jongwan Kim, Sungbo Hwang, Ki Beom Shin, Jiwon Choi, Ky-Youb Nam, Kyoung Tai No

Open access · goldAbstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hocheol LimDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Xuemei JinDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Jongwan KimDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Sungbo HwangDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Ki Beom ShinDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Jiwon ChoiBioinformatics & Molecular Design Research Center (BMDRC), Yonsei University, Seoul 03722, Republic of Korea.
Ky-Youb NamPharos I&BT Co., Ltd., Anyang-si, Gyeonggi-do, 14059, Republic of Korea.
Kyoung Tai NoDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Yonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-linked inhibitor of apoptosis protein (XIAP) is an important regulator of cancer cell survival whose BIR3 domain (XIAP-BIR3) recognizes the Smac N-terminal tetrapeptide sequence (AVPI), making it an attractive protein-protein interaction (PPI) target for cancer therapies. We used the fragment molecular orbital (FMO) method to study the binding modes and affinities between XIAP-BIR3 and a series of its inhibitors (

Indexed as

Drug discoveryFragment molecular orbital methodMD simulationMolecular dockingNatural productProtein-protein interactionXIAP-BIR3 inhibitorX-linked inhibitor of apoptosis protein

Identifiers

PMID31673305
PMCPMC6816037
OpenAlexW2969872865

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.