Evidence map›Paper›PMID 31673122›Full record

ArticleScientific reports2019

Whole mitochondrial genome sequencing highlights mitochondrial impact in gastric cancer.

Giovanna Chaves Cavalcante, Anderson N R Marinho, Ana Karyssa Anaissi, Tatiana Vinasco-Sandoval, André Ribeiro-Dos-Santos, Amanda Ferreira Vidal, Gilderlanio S de Araújo, Samia Demachki, Ândrea Ribeiro-Dos-Santos

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  17. Mitochondria inInternational journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Giovanna Chaves CavalcanteLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil.
Anderson N R MarinhoLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil.
Ana Karyssa AnaissiNúcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, 66073-005, Brazil.
Tatiana Vinasco-SandovalLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil.ORCID http://orcid.org/0000-0002-0189-0573
André Ribeiro-Dos-SantosLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil.
Amanda Ferreira VidalLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil.
Gilderlanio S de AraújoLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil.
Samia DemachkiNúcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, 66073-005, Brazil.
Ândrea Ribeiro-Dos-SantosLaboratório de Genética Humana e Médica, Universidade Federal do Pará, Belém, 66075-970, Brazil. akelyufpa@gmail.com.ORCID http://orcid.org/0000-0001-7001-1483

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondria are organelles that perform major roles in cellular operation. Thus, alterations in mitochondrial genome (mtGenome) may lead to mitochondrial dysfunction and cellular deregulation, influencing carcinogenesis. Gastric cancer (GC) is one of the most incident and mortal types of cancer in Brazil, particularly in the Amazon region. Here, we sequenced and compared the whole mtGenome extracted from FFPE tissue samples of GC patients (tumor and internal control - IC) and cancer-free individuals (external control - EC) from this region. We found 3-fold more variants and up to 9-fold more heteroplasmic regions in tumor when compared to paired IC samples. Moreover, tumor presented more heteroplasmic variants when compared to EC, while IC and EC showed no significant difference when compared to each other. Tumor also presented substantially more variants in the following regions: MT-RNR1, MT-ND5, MT-ND4, MT-ND2, MT-DLOOP1 and MT-CO1. In addition, our haplogroup results indicate an association of Native American ancestry (particularly haplogroup C) to gastric cancer development. To the best of our knowledge, this is the first study to sequence the whole mtGenome from FFPE samples and to apply mtGenome analysis in association to GC in Brazil.

Indexed as

Genome, MitochondrialWhole Genome SequencingAdultFemaleHumansMaleMiddle AgedStomach NeoplasmsYoung Adult

Identifiers

PMID31673122
PMCPMC6823544

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.